Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BkAM31D_RS13175 Genome accession   NZ_CP020814
Coordinates   2610327..2611580 (-) Length   417 a.a.
NCBI ID   WP_066150052.1    Uniprot ID   A0A1X9MBY7
Organism   Halalkalibacter krulwichiae strain AM31D     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2605327..2616580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BkAM31D_RS13160 (BkAM31D_14405) - 2606249..2607238 (-) 990 WP_066150042.1 metallophosphoesterase -
  BkAM31D_RS13165 (BkAM31D_14410) recA 2607393..2608442 (-) 1050 WP_066150046.1 recombinase RecA Machinery gene
  BkAM31D_RS13170 (BkAM31D_14415) - 2608702..2610330 (-) 1629 WP_066150049.1 DEAD/DEAH box helicase -
  BkAM31D_RS13175 (BkAM31D_14420) cinA 2610327..2611580 (-) 1254 WP_066150052.1 competence/damage-inducible protein A Machinery gene
  BkAM31D_RS13180 (BkAM31D_14425) pgsA 2611596..2612174 (-) 579 WP_066150055.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BkAM31D_RS13185 (BkAM31D_14430) - 2612356..2613249 (-) 894 WP_066150058.1 RodZ family helix-turn-helix domain-containing protein -
  BkAM31D_RS13190 (BkAM31D_14435) - 2613270..2614043 (-) 774 WP_066150061.1 DUF3388 domain-containing protein -
  BkAM31D_RS13195 (BkAM31D_14440) - 2614247..2614498 (-) 252 WP_066150064.1 DUF3243 domain-containing protein -
  BkAM31D_RS13200 (BkAM31D_14445) ymfI 2614580..2615299 (-) 720 WP_066150068.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45845.43 Da        Isoelectric Point: 5.5228

>NTDB_id=226012 BkAM31D_RS13175 WP_066150052.1 2610327..2611580(-) (cinA) [Halalkalibacter krulwichiae strain AM31D]
MNAEIISVGSELLLGQIVNTNAAYLSQELAILGVNVFHQTTVGDNDTRLTEALIQAKKRSDLIILTGGLGPTKDDLTKES
VARFVGKPLVHHEQSLHNIEEFFKKRNRPMSDNNRKQALVIEGSHVLMNHFGMAPGMVVTFEGVLFVLLPGPPKEMKPMF
TNELLPYITAQVGSRESITSRVLRFFDIGESQLETDLLDIIEGQTNPTIAPLASEGEVTLRLTVKHADEKEQQRLLDETE
ALITNRVGDYLYGYGDTSLIEQLFIQLQQKQVTIASAESLTGGKFSGMLTSFAGSSSVFRGGVVSYATDVKEKVLGVQGD
IINKFGVISSQCAKEMARCAKDQYRAEIAISFTGVAGPARQEEKEPGTVFIGIAGLTKEPLSYELNLAGGREAIRDRAIK
YGCFYLLNELKRWNKAE

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=226012 BkAM31D_RS13175 WP_066150052.1 2610327..2611580(-) (cinA) [Halalkalibacter krulwichiae strain AM31D]
ATGAATGCTGAAATTATATCTGTAGGTTCTGAATTGTTACTAGGACAAATTGTCAACACGAATGCAGCATACCTCTCACA
AGAATTAGCCATTTTAGGAGTGAATGTTTTTCATCAAACTACTGTAGGAGATAATGACACAAGGTTAACAGAAGCATTAA
TACAAGCGAAAAAAAGATCTGACCTTATTATTTTAACCGGTGGTTTAGGACCAACTAAAGATGATCTCACAAAGGAGTCG
GTAGCTCGTTTCGTAGGAAAACCTTTAGTACATCATGAACAATCTTTACATAATATTGAAGAATTTTTTAAGAAGCGTAA
TCGACCGATGTCTGATAATAACCGAAAGCAAGCACTCGTAATAGAAGGTAGCCATGTACTAATGAACCATTTTGGGATGG
CTCCGGGGATGGTAGTCACTTTTGAAGGAGTCCTATTTGTTTTATTACCGGGCCCACCGAAAGAGATGAAGCCGATGTTT
ACCAATGAATTGCTTCCTTATATTACTGCACAAGTAGGTAGTCGCGAATCGATTACATCAAGAGTACTTCGTTTCTTTGA
TATCGGTGAATCGCAACTTGAGACGGATTTATTAGATATAATTGAGGGGCAAACAAACCCGACAATCGCGCCTTTGGCTA
GTGAGGGTGAGGTTACTTTAAGACTAACCGTTAAACATGCTGATGAAAAAGAGCAACAAAGACTGTTGGATGAAACTGAA
GCACTTATTACAAACCGTGTTGGAGATTACCTATATGGATATGGTGATACATCATTAATAGAACAGCTCTTTATCCAATT
GCAACAGAAACAGGTTACGATTGCTTCTGCAGAGAGCTTAACAGGCGGGAAATTTTCTGGAATGTTGACTTCTTTTGCAG
GTTCATCCTCTGTCTTTAGAGGGGGAGTTGTCTCCTATGCAACAGATGTGAAAGAGAAAGTATTGGGAGTGCAAGGAGAT
ATTATTAACAAGTTTGGAGTTATTAGTTCACAGTGTGCTAAAGAGATGGCACGTTGTGCGAAAGATCAATATCGTGCAGA
GATTGCCATTAGCTTCACGGGTGTAGCGGGCCCGGCTCGTCAAGAAGAAAAAGAACCTGGTACTGTCTTTATTGGAATTG
CTGGATTAACAAAAGAACCGCTATCTTATGAATTAAATTTAGCTGGTGGACGAGAAGCTATTCGAGATCGTGCCATTAAA
TATGGATGTTTTTATTTATTGAACGAATTGAAAAGGTGGAATAAAGCAGAATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9MBY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.049

98.321

0.571
  cinA Streptococcus mutans UA159

46.835

94.724

0.444
  cinA Streptococcus mitis NCTC 12261

47.258

91.847

0.434
  cinA Streptococcus pneumoniae TIGR4

46.736

91.847

0.429
  cinA Streptococcus mitis SK321

46.736

91.847

0.429
  cinA Streptococcus pneumoniae Rx1

46.475

91.847

0.427
  cinA Streptococcus pneumoniae R6

46.475

91.847

0.427
  cinA Streptococcus pneumoniae D39

46.214

91.847

0.424
  cinA Streptococcus suis isolate S10

40.476

90.647

0.367

Multiple sequence alignment