Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BLMD_RS09510 Genome accession   NZ_CP020352
Coordinates   1885963..1887009 (+) Length   348 a.a.
NCBI ID   WP_035338734.1    Uniprot ID   A0A7Z0WU65
Organism   Bacillus paralicheniformis strain MDJK30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1880963..1892009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS09485 (BLMD_09485) - 1881661..1881918 (+) 258 WP_020451452.1 DUF3243 domain-containing protein -
  BLMD_RS09490 (BLMD_09490) - 1882165..1882956 (+) 792 WP_003181917.1 YmfK family protein -
  BLMD_RS09495 (BLMD_09495) - 1882974..1883876 (+) 903 WP_025811432.1 helix-turn-helix domain-containing protein -
  BLMD_RS09500 (BLMD_09500) pgsA 1883943..1884524 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BLMD_RS09505 (BLMD_09505) cinA 1884544..1885794 (+) 1251 WP_020451455.1 competence/damage-inducible protein A Machinery gene
  BLMD_RS09510 (BLMD_09510) recA 1885963..1887009 (+) 1047 WP_035338734.1 recombinase RecA Machinery gene
  BLMD_RS09515 (BLMD_09515) rny 1887352..1888911 (+) 1560 WP_020451457.1 ribonuclease Y -
  BLMD_RS09520 (BLMD_09520) - 1888998..1889795 (+) 798 WP_043054308.1 TIGR00282 family metallophosphoesterase -
  BLMD_RS09525 (BLMD_09525) spoVS 1889997..1890257 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  BLMD_RS09530 (BLMD_09530) - 1890363..1891283 (+) 921 WP_020451459.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37820.99 Da        Isoelectric Point: 4.7661

>NTDB_id=221635 BLMD_RS09510 WP_035338734.1 1885963..1887009(+) (recA) [Bacillus paralicheniformis strain MDJK30]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGVVPAQEDEAQAQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=221635 BLMD_RS09510 WP_035338734.1 1885963..1887009(+) (recA) [Bacillus paralicheniformis strain MDJK30]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGTTCGATTATGAAACT
CGGCGAACAAACTGAAACGAGAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGACACGGCTCTTGGAGTGGGCGGAT
ACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTCATCGACGCCGAGCACGCGCTCGACCCCGTCTATGCACAAAAGCTGGGCGT
CAACATTGATGAGCTTTTGCTGTCACAGCCTGATACGGGCGAGCAGGCGCTTGAAATCGCCGAAGCTCTTGTCAGAAGCG
GAGCGGTGGATATCGTTGTCATCGACTCTGTGGCAGCGCTTGTGCCGAAAGCTGAAATCGAAGGAGATATGGGGGATTCC
CACGTCGGTTTGCAGGCCAGACTGATGTCTCAAGCGCTTCGTAAGCTTTCCGGAGCGATCAATAAATCGAAGACCATCGC
GATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTCATGTTTGGAAATCCTGAGACGACGCCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGCCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGCAACGATGTCATGGGGAACAAGACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCCCCTCCATTCCGGACTGCCGAAGTGGACATTATGTACGGGGAAGGGATTTC
AAAAGAAGGAGAAATCATTGATCTCGGAACAGAGCTTGACATCGTTCAGAAGAGCGGTGCATGGTACTCTTATCAGGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCCAAACAGTTCCTGAAAGAAAACAAGGACATCCTTTTGATGATTCAAGAGCAG
ATCCGGGAGCACTACGGTTTGGACACTGGAGGCGTTGTTCCTGCTCAGGAAGACGAGGCCCAAGCTCAAGAAGAACTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z0WU65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.997

95.69

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

74.769

93.391

0.698
  recA Streptococcus pneumoniae D39

67.435

99.713

0.672
  recA Streptococcus pneumoniae R6

67.435

99.713

0.672
  recA Streptococcus pneumoniae Rx1

67.435

99.713

0.672
  recA Streptococcus pneumoniae TIGR4

67.435

99.713

0.672
  recA Streptococcus mitis NCTC 12261

67.733

98.851

0.67
  recA Streptococcus mitis SK321

68.769

95.69

0.658
  recA Streptococcus mutans UA159

68.997

94.54

0.652
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.828

0.632
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Ralstonia pseudosolanacearum GMI1000

65.741

93.103

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.426

97.126

0.606
  recA Helicobacter pylori 26695

64.615

93.391

0.603
  recA Helicobacter pylori strain NCTC11637

64.615

93.391

0.603
  recA Acinetobacter baumannii D1279779

61.357

97.414

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.966

0.595
  recA Glaesserella parasuis strain SC1401

59.884

98.851

0.592
  recA Pseudomonas stutzeri DSM 10701

60.234

98.276

0.592
  recA Acinetobacter baylyi ADP1

59.71

99.138

0.592
  recA Vibrio cholerae strain A1552

64.174

92.241

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.241

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment