Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BLMD_RS09505 Genome accession   NZ_CP020352
Coordinates   1884544..1885794 (+) Length   416 a.a.
NCBI ID   WP_020451455.1    Uniprot ID   A0A6I7TVB6
Organism   Bacillus paralicheniformis strain MDJK30     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1879544..1890794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS09480 (BLMD_09480) ymfI 1880859..1881590 (+) 732 WP_020451451.1 elongation factor P 5-aminopentanone reductase -
  BLMD_RS09485 (BLMD_09485) - 1881661..1881918 (+) 258 WP_020451452.1 DUF3243 domain-containing protein -
  BLMD_RS09490 (BLMD_09490) - 1882165..1882956 (+) 792 WP_003181917.1 YmfK family protein -
  BLMD_RS09495 (BLMD_09495) - 1882974..1883876 (+) 903 WP_025811432.1 helix-turn-helix domain-containing protein -
  BLMD_RS09500 (BLMD_09500) pgsA 1883943..1884524 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BLMD_RS09505 (BLMD_09505) cinA 1884544..1885794 (+) 1251 WP_020451455.1 competence/damage-inducible protein A Machinery gene
  BLMD_RS09510 (BLMD_09510) recA 1885963..1887009 (+) 1047 WP_035338734.1 recombinase RecA Machinery gene
  BLMD_RS09515 (BLMD_09515) rny 1887352..1888911 (+) 1560 WP_020451457.1 ribonuclease Y -
  BLMD_RS09520 (BLMD_09520) - 1888998..1889795 (+) 798 WP_043054308.1 TIGR00282 family metallophosphoesterase -
  BLMD_RS09525 (BLMD_09525) spoVS 1889997..1890257 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45642.05 Da        Isoelectric Point: 5.1633

>NTDB_id=221634 BLMD_RS09505 WP_020451455.1 1884544..1885794(+) (cinA) [Bacillus paralicheniformis strain MDJK30]
MKLERKAEIIAVGSELLLGQIANTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQKRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFRKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPKETNRLL
KETEDLILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSTWLTEMSGASEYFKGGAVCYTNELKVSAAG
VAEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=221634 BLMD_RS09505 WP_020451455.1 1884544..1885794(+) (cinA) [Bacillus paralicheniformis strain MDJK30]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGTTCTGAGCTTCTGCTCGGACAAATCGCTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGATAACCCTGAACGCCTTA
AACAAGTCATTCAGACAGCTCAGAAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCTGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAGAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGTTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTCGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTCTTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAAGGAAAAGATCGTGTCAAGGGTGCT
GCGGTTCTTCGGCATCGGAGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CCCCGCTTGCGGCCGACGGGGAAGTCACGCTCAGGCTCACGGCAAAGCATGCGGATCCGAAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCTCATCCTGGAGCGGGTCGGAGAGTTCTTTTACGGGTATGATGATACATCTCTTGCAGAAGAGCT
TGCGAAAGCATGCAGGAGCAAGGGAATGACCTTGGCCGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCACCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTTTCAGCGGCCGGC
GTTGCTGAAGACACGCTGCAGCGCTACGGTGCGGTCAGCGCGCAATGCGCAAAAGAGCTCGCCGCAGGCATCAGAGTCAA
AACAGGAAGCGATATTGGCATCAGCTTTACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCAGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAAGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGAAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.683

100

0.767
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.474
  cinA Streptococcus mitis SK321

46.539

100

0.469
  cinA Streptococcus pneumoniae R6

46.539

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.469
  cinA Streptococcus pneumoniae D39

46.301

100

0.466
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392

Multiple sequence alignment