Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B4X03_RS04475 Genome accession   NZ_CP020085
Coordinates   893548..894666 (-) Length   372 a.a.
NCBI ID   WP_021114077.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888548..899666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS04425 ubiK 889883..890143 (-) 261 WP_010786182.1 ubiquinone biosynthesis accessory factor UbiK -
  B4X03_RS04450 aroE 890828..891646 (-) 819 WP_021114075.1 shikimate dehydrogenase -
  B4X03_RS04455 - 891650..892204 (-) 555 WP_021112761.1 Sua5/YciO/YrdC/YwlC family protein -
  B4X03_RS04460 - 892204..892734 (-) 531 WP_021112716.1 type I DNA topoisomerase -
  B4X03_RS04465 yqfB 892742..893047 (-) 306 WP_021114076.1 N(4)-acetylcytidine aminohydrolase -
  B4X03_RS04470 recX 893040..893495 (-) 456 WP_005713086.1 recombination regulator RecX -
  B4X03_RS04475 recA 893548..894666 (-) 1119 WP_021114077.1 recombinase RecA Machinery gene
  B4X03_RS04480 - 894799..895404 (-) 606 WP_021114078.1 aminotransferase class IV family protein -
  B4X03_RS04485 - 895382..896353 (-) 972 WP_021114079.1 aminodeoxychorismate synthase component I -
  B4X03_RS04490 - 896386..896580 (+) 195 Protein_871 cation transporter -
  B4X03_RS04495 tehB 896804..897667 (+) 864 WP_082259130.1 SAM-dependent methyltransferase TehB -
  B4X03_RS04500 dusA 897782..898753 (+) 972 WP_021116197.1 tRNA dihydrouridine(20/20a) synthase DusA -
  B4X03_RS12065 - 899345..899557 (+) 213 WP_021119235.1 hypothetical protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40378.01 Da        Isoelectric Point: 4.8395

>NTDB_id=220960 B4X03_RS04475 WP_021114077.1 893548..894666(-) (recA) [Glaesserella parasuis strain CL120103]
MAENKKSSKNNTVVKQVEPEQKKQALEAALAQIEKQFGKGSIMKLGQTEQLDIESVSTGSLGLDLALGIGGLPMGRIVEI
YGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDELLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRCGVVKDGDEIIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKNN
AVKWLKENREIADKLEQEIRNTLASNPNNLLKATASDSNDESDVEEFSEEEL

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=220960 B4X03_RS04475 WP_021114077.1 893548..894666(-) (recA) [Glaesserella parasuis strain CL120103]
ATGGCTGAGAATAAGAAATCTTCAAAAAACAATACCGTCGTTAAACAAGTTGAACCAGAACAGAAAAAACAAGCATTGGA
AGCGGCACTTGCTCAAATTGAAAAACAATTTGGTAAAGGCTCTATTATGAAATTGGGGCAGACTGAACAATTAGATATTG
AGTCTGTTTCAACGGGATCATTAGGACTAGACCTTGCTCTTGGTATTGGTGGCTTGCCAATGGGACGTATTGTTGAAATC
TATGGGCCAGAATCATCAGGTAAAACAACCTTAACACTTTCTTTAATTGCCCAAGCTCAAAAAGGCAATAAAACCTGTGC
ATTTATTGATGCGGAACACGCATTAGATCCTGTCTATGCTCGCAATTTAGGGGTAAATACCGATGAATTACTAATTTCTC
AGCCAGATAACGGCGAACAAGCTCTTGAAATCTGTGATGCGTTAGTGCGTTCAGGGGCAGTTGATGTCATTATTGTGGAC
TCTGTCGCTGCACTCACGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCGCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTGCGTAAACTTACTGCGAACATCAAAAATACCAACTGTTTAGTTGTATTTATCAACCAAATCCGTATGA
AAATTGGTGTAATGTTTGGTAATCCAGAAACCACCACAGGCGGTAATGCACTGAAATTCTATGCCTCTGTTCGTTTAGAT
ATTCGTCGTTGTGGTGTAGTCAAAGATGGCGATGAAATTATTGGTAGTGAAACAAAAGTAAAAGTAGTAAAAAACAAAGT
TGCACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGGATTTCTCGTATGAATGAGCTACTGATTTTAG
CTGAAGCAAATGGCTTTATTAAGAAATCAGGTGCTTGGTTCTCTTACGACGGAACGAAAATTGGACAAGGTAAAAATAAT
GCAGTGAAATGGTTAAAAGAGAACCGTGAAATTGCAGATAAACTTGAACAAGAGATCCGAAATACATTGGCATCAAACCC
AAATAACCTATTAAAAGCGACGGCAAGCGACAGCAACGATGAAAGCGATGTCGAAGAGTTTAGCGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

99.194

100

0.992
  recA Pseudomonas stutzeri DSM 10701

71.053

91.935

0.653
  recA Vibrio cholerae strain A1552

69.231

94.355

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

94.355

0.653
  recA Acinetobacter baylyi ADP1

69.006

91.935

0.634
  recA Neisseria gonorrhoeae MS11

66.952

94.355

0.632
  recA Neisseria gonorrhoeae MS11

66.952

94.355

0.632
  recA Neisseria gonorrhoeae strain FA1090

66.952

94.355

0.632
  recA Acinetobacter baumannii D1279779

70.606

88.71

0.626
  recA Ralstonia pseudosolanacearum GMI1000

70.159

84.677

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.751

93.817

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.724

87.634

0.567
  recA Streptococcus pneumoniae R6

60.35

92.204

0.556
  recA Streptococcus pneumoniae Rx1

60.35

92.204

0.556
  recA Streptococcus pneumoniae D39

60.35

92.204

0.556
  recA Streptococcus pneumoniae TIGR4

60.35

92.204

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.692

87.366

0.556
  recA Streptococcus mitis NCTC 12261

60.882

91.398

0.556
  recA Streptococcus mitis SK321

60.294

91.398

0.551
  recA Streptococcus mutans UA159

60

91.398

0.548
  recA Bacillus subtilis subsp. subtilis str. 168

61.818

88.71

0.548
  recA Streptococcus pyogenes NZ131

59.118

91.398

0.54
  recA Helicobacter pylori 26695

60.976

88.172

0.538
  recA Helicobacter pylori strain NCTC11637

60.671

88.172

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.558

92.473

0.532
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

86.29

0.511

Multiple sequence alignment