Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BC8716_RS17100 Genome accession   NZ_CP019985
Coordinates   3511304..3512356 (+) Length   350 a.a.
NCBI ID   WP_094427664.1    Uniprot ID   A0A268S3W6
Organism   Shouchella clausii strain DSM 8716     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3506304..3517356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC8716_RS17080 (BC8716_17065) - 3506556..3507464 (+) 909 WP_094427660.1 RodZ domain-containing protein -
  BC8716_RS17085 (BC8716_17070) pgsA 3507620..3508198 (+) 579 WP_011247045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BC8716_RS17090 (BC8716_17075) cinA 3508212..3509465 (+) 1254 WP_094427662.1 competence/damage-inducible protein A Machinery gene
  BC8716_RS17095 (BC8716_17080) - 3509462..3511075 (+) 1614 WP_062750624.1 DEAD/DEAH box helicase -
  BC8716_RS17100 (BC8716_17085) recA 3511304..3512356 (+) 1053 WP_094427664.1 recombinase RecA Machinery gene
  BC8716_RS17105 (BC8716_17090) - 3512553..3513545 (+) 993 WP_094427666.1 metallophosphoesterase -
  BC8716_RS17110 (BC8716_17095) - 3513532..3514968 (+) 1437 WP_094427668.1 AAA family ATPase -
  BC8716_RS17115 (BC8716_17100) - 3514965..3515219 (+) 255 WP_094427670.1 hypothetical protein -
  BC8716_RS17120 (BC8716_17105) - 3515209..3515871 (+) 663 WP_094427672.1 ATPase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37925.23 Da        Isoelectric Point: 5.2211

>NTDB_id=219581 BC8716_RS17100 WP_094427664.1 3511304..3512356(+) (recA) [Shouchella clausii strain DSM 8716]
MSDRKQALDMALRHIEKQFGKGSVMKLGEQAEQRVSTVSSGALALDIALGVGGYPKGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGALDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNEIVGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGSMLDIAAELDIVEKSGAWYSYKGDRLGQGRENSKQFLKENPEITAEIERL
IRDHHGLDGEAKLEEAAEEQAFEDVPLDLK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=219581 BC8716_RS17100 WP_094427664.1 3511304..3512356(+) (recA) [Shouchella clausii strain DSM 8716]
ATGAGTGATAGAAAACAAGCGCTTGACATGGCTTTACGCCATATTGAGAAACAATTTGGCAAAGGCTCTGTCATGAAGCT
AGGTGAACAGGCTGAACAGCGCGTATCGACGGTTTCAAGCGGTGCCCTCGCCCTTGATATTGCTTTGGGCGTAGGTGGCT
ATCCAAAAGGAAGAGTCATTGAAGTATATGGCCCAGAATCTTCCGGTAAAACGACCGTTGCCCTCCATGCAATTGCTGAA
GTGCAGCGCAATGGTGGCCAAGCTGCTTTTATTGATGCTGAGCATGCTCTTGATCCTGTCTATGCGAGCAAACTAGGCGT
TAATATCGATGAGCTCTTGCTGTCCCAACCTGATACAGGCGAACAGGCACTTGAAATTGCGGAAGCACTTGTGCGCAGTG
GTGCCCTTGATATAATTGTCATTGATAGTGTAGCTGCGCTCGTACCAAAAGCGGAAATTGAAGGGGAAATGGGCGACTCG
CATGTCGGCTTGCAAGCACGCTTAATGTCACAGGCGCTCCGGAAATTATCAGGAGCGATCAATAAGTCGAAAACGATTGC
GATCTTCATCAACCAAATCCGTGAAAAAGTCGGCGTTATGTTCGGCAATCCAGAAACGACGCCAGGGGGGCGCGCCCTTA
AATTTTACTCGTCCGTCCGCTTGGAAGTGCGCCGTGCCGAGGCGTTGAAGCAAGGGAATGAGATTGTCGGCAACCGCACT
AAAATCAAAGTCGTCAAAAACAAAGTGGCTCCGCCTTTCCGTTTAGCGGAAGTTGACATTATGTACGGAGAAGGCATTTC
CAGGGAAGGTTCGATGCTTGACATTGCGGCGGAACTCGATATTGTCGAAAAAAGCGGTGCTTGGTATTCTTACAAAGGCG
ACCGCCTTGGGCAAGGCCGTGAAAATTCAAAACAATTTTTGAAAGAAAACCCGGAAATTACCGCCGAAATTGAGCGTTTG
ATTCGTGACCACCACGGGCTCGACGGGGAAGCGAAGCTGGAAGAGGCAGCTGAAGAACAAGCTTTTGAAGATGTGCCTTT
AGATTTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268S3W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.841

93.714

0.786
  recA Streptococcus mitis NCTC 12261

67.598

100

0.691
  recA Streptococcus pneumoniae Rx1

66.851

100

0.691
  recA Streptococcus pneumoniae D39

66.851

100

0.691
  recA Streptococcus pneumoniae R6

66.851

100

0.691
  recA Streptococcus pneumoniae TIGR4

66.851

100

0.691
  recA Streptococcus mitis SK321

67.318

100

0.689
  recA Latilactobacillus sakei subsp. sakei 23K

72

92.857

0.669
  recA Streptococcus mutans UA159

68.843

96.286

0.663
  recA Streptococcus pyogenes NZ131

69.207

93.714

0.649
  recA Lactococcus lactis subsp. cremoris KW2

67.879

94.286

0.64
  recA Ralstonia pseudosolanacearum GMI1000

66.055

93.429

0.617
  recA Vibrio cholerae strain A1552

61.494

99.429

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.494

99.429

0.611
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.832

93.429

0.606
  recA Acinetobacter baumannii D1279779

62.537

96.857

0.606
  recA Acinetobacter baylyi ADP1

64.615

92.857

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

93.714

0.597
  recA Pseudomonas stutzeri DSM 10701

65

91.429

0.594
  recA Glaesserella parasuis strain SC1401

64.375

91.429

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

93.429

0.574
  recA Helicobacter pylori strain NCTC11637

61.231

92.857

0.569
  recA Helicobacter pylori 26695

60.923

92.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

90.286

0.549

Multiple sequence alignment