Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BC8716_RS17090 Genome accession   NZ_CP019985
Coordinates   3508212..3509465 (+) Length   417 a.a.
NCBI ID   WP_094427662.1    Uniprot ID   -
Organism   Shouchella clausii strain DSM 8716     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3503212..3514465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC8716_RS17060 (BC8716_17045) - 3503250..3504542 (+) 1293 WP_094427654.1 pitrilysin family protein -
  BC8716_RS17065 (BC8716_17050) - 3504539..3505252 (+) 714 WP_094427656.1 SDR family oxidoreductase -
  BC8716_RS17070 (BC8716_17055) - 3505325..3505573 (+) 249 WP_094427658.1 DUF3243 domain-containing protein -
  BC8716_RS17075 (BC8716_17060) - 3505767..3506534 (+) 768 WP_011247047.1 DUF3388 domain-containing protein -
  BC8716_RS17080 (BC8716_17065) - 3506556..3507464 (+) 909 WP_094427660.1 RodZ domain-containing protein -
  BC8716_RS17085 (BC8716_17070) pgsA 3507620..3508198 (+) 579 WP_011247045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BC8716_RS17090 (BC8716_17075) cinA 3508212..3509465 (+) 1254 WP_094427662.1 competence/damage-inducible protein A Machinery gene
  BC8716_RS17095 (BC8716_17080) - 3509462..3511075 (+) 1614 WP_062750624.1 DEAD/DEAH box helicase -
  BC8716_RS17100 (BC8716_17085) recA 3511304..3512356 (+) 1053 WP_094427664.1 recombinase RecA Machinery gene
  BC8716_RS17105 (BC8716_17090) - 3512553..3513545 (+) 993 WP_094427666.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44959.53 Da        Isoelectric Point: 6.3509

>NTDB_id=219580 BC8716_RS17090 WP_094427662.1 3508212..3509465(+) (cinA) [Shouchella clausii strain DSM 8716]
MNAEIMAVGSELLLGQIANTNGQFISKQLASIGVDVYRHTVVGDNEDRLKKALQEAHERADLVILTGGLGPTKDDLTKET
VAAFCGKKLVYDEAALHEIEHYFKRHNRVMTPNNKKQAYVIEGCTVLANRHGMAPGMLCELEDGKKLALLPGPPSEMKPM
FVNELLPKLLGATEHTEITSRVLHFFGIGESQLETDLLDLIATQTNPTIAPLAGDGEVKLRLTVKHADKNEAARLLDETE
ALIRKRVGSYLYGYNETTLVKETFLRLQASGLTIASAESLTAGLFSSELAAFAGASDVLKGSVTAYSNELKQQLLQVSSA
TLASDGAISEACALEMARGVKTLYGSDMAISFTGVAGPGVQEGHEAGTVFLALLLPGGKERVYTLSLSGGRNAVRMRAVK
FGYFYLLEELKRSNGSK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=219580 BC8716_RS17090 WP_094427662.1 3508212..3509465(+) (cinA) [Shouchella clausii strain DSM 8716]
TTGAATGCAGAAATAATGGCCGTTGGCTCAGAGCTGCTTCTTGGCCAGATCGCCAATACAAATGGCCAATTCATCTCTAA
ACAGCTAGCAAGCATTGGTGTCGACGTGTACCGGCACACAGTTGTGGGAGATAACGAGGACAGGCTAAAAAAAGCACTTC
AAGAAGCACATGAGCGTGCCGATCTCGTCATCTTAACGGGCGGGCTTGGCCCGACAAAAGATGACTTGACGAAAGAAACG
GTCGCGGCGTTTTGTGGAAAAAAGCTTGTGTACGATGAAGCCGCTCTTCATGAAATTGAACATTATTTTAAACGCCATAA
CCGCGTCATGACACCTAACAACAAAAAGCAAGCCTATGTGATTGAAGGCTGCACCGTGCTTGCAAACCGTCATGGCATGG
CCCCCGGAATGCTATGCGAGCTTGAAGACGGGAAAAAACTGGCGCTTTTGCCTGGACCACCGAGCGAAATGAAGCCAATG
TTCGTCAACGAGCTTTTGCCTAAACTGTTAGGCGCAACTGAACATACAGAAATCACTTCCCGTGTGCTTCATTTTTTTGG
AATTGGGGAATCACAATTAGAAACAGACCTTTTGGACTTGATTGCGACGCAAACGAACCCGACAATCGCTCCATTGGCTG
GTGATGGGGAAGTGAAACTGCGCTTGACTGTAAAGCATGCAGATAAAAATGAAGCTGCCCGTTTGCTTGATGAAACGGAA
GCATTGATTCGGAAACGGGTCGGTTCATATTTGTACGGCTACAACGAAACGACACTGGTCAAGGAAACGTTTTTGCGTTT
GCAGGCGAGCGGTCTGACAATTGCCAGCGCCGAAAGCTTGACTGCCGGGCTTTTCTCAAGCGAATTGGCTGCGTTTGCTG
GTGCATCGGACGTGCTAAAAGGGAGCGTGACTGCCTACTCCAATGAACTGAAGCAGCAATTGCTTCAAGTTTCAAGCGCC
ACCCTTGCTAGCGACGGCGCCATCAGCGAAGCATGTGCGTTGGAAATGGCACGTGGCGTCAAAACACTTTACGGTTCCGA
TATGGCCATCTCTTTTACAGGAGTGGCTGGGCCCGGGGTGCAAGAGGGCCACGAAGCGGGTACCGTTTTTCTGGCGCTTC
TTTTGCCAGGAGGGAAAGAGCGCGTATACACGCTGTCTTTATCGGGGGGACGCAATGCCGTACGAATGCGGGCGGTGAAA
TTTGGCTATTTTTATTTACTGGAAGAATTGAAAAGGAGCAATGGTAGTAAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.908

98.561

0.571
  cinA Streptococcus mitis NCTC 12261

48.775

97.842

0.477
  cinA Streptococcus mitis SK321

48.529

97.842

0.475
  cinA Streptococcus pneumoniae TIGR4

48.039

97.842

0.47
  cinA Streptococcus mutans UA159

48.139

96.643

0.465
  cinA Streptococcus pneumoniae Rx1

47.549

97.842

0.465
  cinA Streptococcus pneumoniae R6

47.549

97.842

0.465
  cinA Streptococcus pneumoniae D39

47.304

97.842

0.463

Multiple sequence alignment