Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LS41612_RS17450 Genome accession   NZ_CP019980
Coordinates   3519288..3520352 (-) Length   354 a.a.
NCBI ID   WP_024361961.1    Uniprot ID   A0A2S0K3L9
Organism   Lysinibacillus sphaericus strain DSM 28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3514288..3525352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS41612_RS17430 (LS41612_17430) - 3514718..3515482 (-) 765 WP_024361958.1 tyrosine-protein phosphatase -
  LS41612_RS17435 (LS41612_17435) - 3515514..3516218 (-) 705 WP_024361959.1 CpsD/CapB family tyrosine-protein kinase -
  LS41612_RS17440 (LS41612_17440) - 3516250..3516948 (-) 699 WP_029747181.1 YveK family protein -
  LS41612_RS17445 (LS41612_17445) rny 3517274..3518833 (-) 1560 WP_024361960.1 ribonuclease Y -
  LS41612_RS17450 (LS41612_17450) recA 3519288..3520352 (-) 1065 WP_024361961.1 recombinase RecA Machinery gene
  LS41612_RS17455 (LS41612_17455) cinA 3520596..3521855 (-) 1260 WP_024361962.1 competence/damage-inducible protein A Machinery gene
  LS41612_RS17460 (LS41612_17460) pgsA 3521873..3522451 (-) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LS41612_RS17465 (LS41612_17465) - 3522499..3523410 (-) 912 WP_172583013.1 RodZ family helix-turn-helix domain-containing protein -
  LS41612_RS17470 (LS41612_17470) - 3523427..3524215 (-) 789 WP_024361965.1 DUF3388 domain-containing protein -
  LS41612_RS17475 (LS41612_17475) - 3524443..3524700 (-) 258 WP_024361966.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38189.46 Da        Isoelectric Point: 4.7884

>NTDB_id=219507 LS41612_RS17450 WP_024361961.1 3519288..3520352(-) (recA) [Lysinibacillus sphaericus strain DSM 28]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAILEEIANK
IRSSYGIAASSYTIAAHDDEEMDEELMLLLEDDK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=219507 LS41612_RS17450 WP_024361961.1 3519288..3520352(-) (recA) [Lysinibacillus sphaericus strain DSM 28]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAATTTCGGTAAAGGCTCTATCATGAAGCT
AGGCGAAAAAACAGATTTAGAAATTGCTACATCTTCAAGTGGTTCGCTAGCGCTTGATGCAGCATTAGGTGTTGGTGGCT
ATCCACGTGGACGTATTATTGAAGTATATGGTCCAGAATCATCAGGTAAAACGACCGTTGCGCTTCATGCGATTGCAGAA
GTACAAGCTAAGGGCGGACAAGCAGCATTTATCGATGCTGAACATGCATTAGATCCAATTTACGCTCAAAAATTAGGCGT
AAATATTGATGAACTATTACTATCTCAACCAGATACAGGTGAGCAAGCGCTGGAAATTGCAGAAGCATTAGTGCGTAGTG
GGGCGATTGATATTATCGTTATTGACTCTGTTGCAGCACTTGTACCAAAAGCTGAAATCGAAGGCGATATGGGTGACTCG
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCGATTAATAAGTCTAAAACAATCGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTTATGTTCGGAAATCCAGAAACAACTCCTGGTGGTCGTGCGCTAA
AATTCTATAGCTCAGTTCGTTTAGAAGTACGTCGTGCTGAAGCAATCAAACAAGGTAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTCAAAAATAAAGTAGCGCCACCATTCCGTACAGCTGAAGTTGATATTATGTATGGTGAAGGGATTTC
TAAAGAAGGCGAAACGGTGGATTTAGGTGTAGAATTAGACATCGTTCAAAAAAGTGGATCTTGGTATGCATATGGTGATG
AGCGTCTAGGCCAAGGACGTGAAAACGCAAAACAATATTTAAAAGAAAACCCTGCTATTTTAGAAGAAATTGCAAATAAA
ATTCGTTCTTCTTATGGCATAGCTGCATCATCTTATACCATTGCTGCACATGATGATGAGGAAATGGATGAAGAGTTAAT
GCTTCTTCTTGAAGATGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0K3L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.156

92.373

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

71.51

99.153

0.709
  recA Streptococcus mitis NCTC 12261

65.193

100

0.667
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mutans UA159

63.889

100

0.65
  recA Streptococcus pneumoniae Rx1

68.485

93.22

0.638
  recA Streptococcus pneumoniae D39

68.485

93.22

0.638
  recA Streptococcus pneumoniae R6

68.485

93.22

0.638
  recA Streptococcus pneumoniae TIGR4

68.485

93.22

0.638
  recA Streptococcus pyogenes NZ131

67.683

92.655

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.22

0.619
  recA Neisseria gonorrhoeae strain FA1090

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Helicobacter pylori strain NCTC11637

62.974

96.893

0.61
  recA Acinetobacter baylyi ADP1

62.069

98.305

0.61
  recA Helicobacter pylori 26695

62.682

96.893

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

96.893

0.605
  recA Acinetobacter baumannii D1279779

60.745

98.588

0.599
  recA Glaesserella parasuis strain SC1401

60.458

98.588

0.596
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Vibrio cholerae strain A1552

64.062

90.395

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

90.395

0.579
  recA Pseudomonas stutzeri DSM 10701

63.24

90.678

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571

Multiple sequence alignment