Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LS41612_RS17455 Genome accession   NZ_CP019980
Coordinates   3520596..3521855 (-) Length   419 a.a.
NCBI ID   WP_024361962.1    Uniprot ID   A0A2S0K3I8
Organism   Lysinibacillus sphaericus strain DSM 28     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3515596..3526855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS41612_RS17440 (LS41612_17440) - 3516250..3516948 (-) 699 WP_029747181.1 YveK family protein -
  LS41612_RS17445 (LS41612_17445) rny 3517274..3518833 (-) 1560 WP_024361960.1 ribonuclease Y -
  LS41612_RS17450 (LS41612_17450) recA 3519288..3520352 (-) 1065 WP_024361961.1 recombinase RecA Machinery gene
  LS41612_RS17455 (LS41612_17455) cinA 3520596..3521855 (-) 1260 WP_024361962.1 competence/damage-inducible protein A Machinery gene
  LS41612_RS17460 (LS41612_17460) pgsA 3521873..3522451 (-) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LS41612_RS17465 (LS41612_17465) - 3522499..3523410 (-) 912 WP_172583013.1 RodZ family helix-turn-helix domain-containing protein -
  LS41612_RS17470 (LS41612_17470) - 3523427..3524215 (-) 789 WP_024361965.1 DUF3388 domain-containing protein -
  LS41612_RS17475 (LS41612_17475) - 3524443..3524700 (-) 258 WP_024361966.1 DUF3243 domain-containing protein -
  LS41612_RS17480 (LS41612_17480) ymfI 3524749..3525477 (-) 729 WP_024361967.1 elongation factor P 5-aminopentanone reductase -
  LS41612_RS17485 (LS41612_17485) yfmH 3525477..3526775 (-) 1299 WP_024361968.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45234.67 Da        Isoelectric Point: 5.1466

>NTDB_id=219508 LS41612_RS17455 WP_024361962.1 3520596..3521855(-) (cinA) [Lysinibacillus sphaericus strain DSM 28]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVFYHTVVGDNSKRLEEAISIAESRANLIIFSGGLGPTKDDLTKET
IARHLGVDLVFDQVALTYIEEFFAKRGRSMTDNNRKQALILAGSEVLANHHGMAPGMILTKDNCTYILLPGPPKELEPMF
QFEAKPKLGKMLNDGGVIVSHVMRFYGIGEAELEVHVQDILDTQTNPTVAPLAADGEVTLRVTAKAQSEDDAHQLIAAKV
AEIRAIVGDYQYGINDDSLASKTVEMLQDNNLTIAAAESLTAGLFQSELAEIPGVGNVLIGGLVTYTEDAKVKQLGISQQ
LLDTHGIVSSECAAAMASAVRQKFGTSIGIGLTGAAGPTAHDHQPVGTVWIGIAIDDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQQLEARGYKKRI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=219508 LS41612_RS17455 WP_024361962.1 3520596..3521855(-) (cinA) [Lysinibacillus sphaericus strain DSM 28]
ATGAATGCTGAAATCCTTGCAGTTGGCTCAGAGTTATTACTTGGACAGATTACAAATACAAATGCAAAATTTATTTCAAA
TCAGCTATCTGAGTTAGGAATTAATGTGTTTTATCATACCGTTGTTGGTGACAATTCAAAACGGTTAGAAGAAGCAATTA
GCATTGCGGAATCGCGCGCTAATCTCATTATTTTTTCAGGAGGCTTAGGTCCAACAAAGGATGATTTGACGAAGGAGACG
ATCGCTCGTCATCTTGGAGTAGACCTTGTATTCGATCAAGTTGCATTGACATACATTGAGGAGTTTTTTGCTAAACGAGG
CCGTTCAATGACGGACAATAATCGCAAGCAGGCGCTAATATTAGCAGGTAGTGAGGTGCTTGCTAATCATCATGGTATGG
CACCAGGAATGATTTTAACAAAAGATAATTGCACTTATATTTTACTTCCTGGCCCTCCAAAAGAATTAGAGCCGATGTTC
CAATTTGAAGCGAAGCCAAAGCTTGGTAAAATGCTTAATGATGGCGGAGTAATTGTGTCTCACGTAATGCGTTTTTATGG
TATTGGGGAAGCAGAGTTAGAAGTACATGTACAGGATATTTTAGATACACAAACCAATCCAACGGTTGCCCCGCTAGCAG
CTGATGGAGAGGTCACTTTACGCGTAACAGCGAAGGCCCAATCAGAGGACGACGCGCACCAGTTGATTGCTGCAAAAGTG
GCAGAAATTCGTGCTATTGTTGGCGACTATCAATATGGCATAAATGATGACTCACTCGCATCAAAAACGGTGGAAATGTT
GCAGGACAATAATTTAACGATTGCTGCGGCAGAAAGTTTAACAGCAGGTTTATTTCAATCAGAGCTGGCTGAAATACCAG
GTGTAGGCAACGTGCTCATTGGAGGACTGGTGACCTATACCGAAGATGCGAAAGTAAAGCAGCTTGGCATTTCTCAACAA
TTACTAGATACGCATGGTATTGTGAGCAGTGAATGTGCTGCGGCAATGGCTAGTGCAGTACGTCAAAAATTTGGTACAAG
TATCGGTATCGGACTAACAGGTGCGGCTGGTCCTACAGCACATGACCATCAGCCAGTAGGAACGGTATGGATTGGTATTG
CCATAGATGACGAAGAGCCAATTACGTATTTACTTCACTTATCGGGTATGCGCAATACAAACCGATTGCGTGCAGTGAAG
TTTACTTGTCACTATTTAATGCAGCAATTGGAAGCACGAGGTTACAAGAAACGTATTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0K3I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus pneumoniae Rx1

45.974

91.885

0.422
  cinA Streptococcus pneumoniae TIGR4

45.974

91.885

0.422
  cinA Streptococcus pneumoniae R6

45.974

91.885

0.422
  cinA Streptococcus mitis SK321

45.953

91.408

0.42
  cinA Streptococcus pneumoniae D39

45.714

91.885

0.42
  cinA Streptococcus mitis NCTC 12261

45.17

91.408

0.413
  cinA Streptococcus mutans UA159

45.503

90.215

0.411
  cinA Streptococcus suis isolate S10

40.212

90.215

0.363

Multiple sequence alignment