Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AZI11_RS04760 Genome accession   NZ_CP019734
Coordinates   989068..990201 (+) Length   377 a.a.
NCBI ID   WP_085768890.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain TMW 1.2108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 984068..995201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZI11_RS04740 (AZI11_04745) yfmH 984711..986000 (+) 1290 WP_021742877.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AZI11_RS04745 (AZI11_04750) - 986114..986968 (+) 855 WP_085768889.1 helix-turn-helix domain-containing protein -
  AZI11_RS04750 (AZI11_04755) pgsA 987081..987668 (+) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AZI11_RS04755 (AZI11_04760) cinA 987724..988974 (+) 1251 WP_039105136.1 competence/damage-inducible protein A Machinery gene
  AZI11_RS04760 (AZI11_04765) recA 989068..990201 (+) 1134 WP_085768890.1 recombinase RecA Machinery gene
  AZI11_RS14965 - 990284..990436 (-) 153 WP_164475119.1 hypothetical protein -
  AZI11_RS04765 (AZI11_04770) rny 990764..992323 (+) 1560 WP_085768891.1 ribonuclease Y -
  AZI11_RS04770 (AZI11_04775) - 992455..993249 (+) 795 WP_085768892.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40366.79 Da        Isoelectric Point: 5.3901

>NTDB_id=218209 AZI11_RS04760 WP_085768890.1 989068..990201(+) (recA) [Levilactobacillus brevis strain TMW 1.2108]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVGDEEAAATKATETKTDALKDKDKGKTKTKDKPADVTPGQIELAPDKSAK

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=218209 AZI11_RS04760 WP_085768890.1 989068..990201(+) (recA) [Levilactobacillus brevis strain TMW 1.2108]
ATGGCTGACGAACGACAAGCAGCGCTGGATAAAGCGCTGAAGAAGATTGAAAAAGACTTTGGTAAAGGCTCGATTATGCG
ATTAGGGGACAATAGTAACCTCGAAGTTGAGACCGTACCATCAGGCTCGTTAGCACTTGACGTTGCCTTGGGTGTCGGCG
GTTACCCTCGCGGACGGATTGTAGAAATTTATGGTCCAGAATCTTCTGGGAAGACGACCGTTGCTCTGCACGCAGTTGCC
GAGGTCCAAAAGCGTGGTGGAACAGCCGCCTATATTGATGCTGAAAATGCGTTGGATCCAGCCTATGCAACGGCATTAGG
GGTTAACATTGATGATTTATTGCTGTCGCAGCCAGATACTGGGGAACAAGGCTTGCAAATCGCTGATGCCTTGATTTCCA
GTGGTGCGATTGACATTGTCGTGGTTGATTCCGTGGCAGCCTTAGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTGGGTCTGCAAGCCCGATTGATGTCACAAGCCTTACGGAAGCTATCTGGGACCATCAATAAAACGAAGACAAT
CGCGTTATTTATCAATCAGATTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAGACCACACCAGGTGGCCGGGCAC
TGAAATTCTATGCGACAGTGCGGTTAGAGGTACGACGGGCCGAACAGATTAAAGATGGCACGGATGTTATCGGTAACCGG
ACGCGAATCAAGGTCGTTAAGAACAAGGTTGCGCCACCATTTAAACGGGCCGAGGTTGATATCATGTACGGGCAAGGAAT
CTCACAAACCGGTGAATTGCTCGACATGGCGGTTGAGAAAGATATCGTTGATAAAAGCGGTTCTTGGTATTCTTATGGTG
AAGACCGAATTGGTCAAGGCCGAGAGAATGCCAAACAGTACTTGGCAGATCATCCAGATATGATGGCCGAAGTTAATCAA
CGTGTCCGGGCTGCTTACGGTGTTGGCGATGAAGAAGCCGCAGCGACTAAAGCAACTGAGACGAAGACTGATGCGCTTAA
AGACAAGGATAAAGGGAAGACAAAGACTAAAGATAAACCGGCCGATGTTACTCCCGGTCAGATTGAGTTAGCACCAGACA
AATCAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

87.195

87.003

0.759
  recA Bacillus subtilis subsp. subtilis str. 168

75.61

87.003

0.658
  recA Streptococcus mitis SK321

70.554

90.981

0.642
  recA Streptococcus pneumoniae D39

68.661

93.103

0.639
  recA Streptococcus pneumoniae R6

68.661

93.103

0.639
  recA Streptococcus pneumoniae TIGR4

68.661

93.103

0.639
  recA Streptococcus pneumoniae Rx1

68.661

93.103

0.639
  recA Streptococcus mitis NCTC 12261

70.175

90.716

0.637
  recA Streptococcus mutans UA159

66.947

94.695

0.634
  recA Streptococcus pyogenes NZ131

70.997

87.798

0.623
  recA Lactococcus lactis subsp. cremoris KW2

69.94

89.125

0.623
  recA Ralstonia pseudosolanacearum GMI1000

62.209

91.247

0.568
  recA Neisseria gonorrhoeae MS11

60.405

91.777

0.554
  recA Neisseria gonorrhoeae strain FA1090

60.405

91.777

0.554
  recA Neisseria gonorrhoeae MS11

60.405

91.777

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.424

87.533

0.546
  recA Acinetobacter baylyi ADP1

58.908

92.308

0.544
  recA Vibrio cholerae strain A1552

62.539

85.676

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

85.676

0.536
  recA Pseudomonas stutzeri DSM 10701

57.971

91.512

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

86.737

0.531
  recA Acinetobacter baumannii D1279779

60.681

85.676

0.52
  recA Glaesserella parasuis strain SC1401

60.125

85.146

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

87.268

0.509
  recA Helicobacter pylori 26695

56.97

87.533

0.499
  recA Helicobacter pylori strain NCTC11637

56.97

87.533

0.499

Multiple sequence alignment