Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AJGP001_RS11080 Genome accession   NZ_CP019401
Coordinates   2181216..2182286 (-) Length   356 a.a.
NCBI ID   WP_058384973.1    Uniprot ID   A0AAI9RQ01
Organism   Planococcus faecalis strain AJ003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176216..2187286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS11065 (AJGP001_11100) - 2177718..2178146 (-) 429 WP_058384975.1 RicAFT regulatory complex protein RicA family protein -
  AJGP001_RS11070 (AJGP001_11105) - 2178436..2179233 (-) 798 WP_058386876.1 TIGR00282 family metallophosphoesterase -
  AJGP001_RS11075 (AJGP001_11110) rny 2179299..2180855 (-) 1557 WP_058384974.1 ribonuclease Y -
  AJGP001_RS11080 (AJGP001_11115) recA 2181216..2182286 (-) 1071 WP_058384973.1 recombinase RecA Machinery gene
  AJGP001_RS11085 (AJGP001_11120) cinA 2182461..2183714 (-) 1254 WP_071154161.1 competence/damage-inducible protein A Machinery gene
  AJGP001_RS11090 (AJGP001_11125) pgsA 2183739..2184317 (-) 579 WP_071154160.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AJGP001_RS11095 (AJGP001_11130) - 2184368..2185225 (-) 858 WP_071154159.1 RodZ domain-containing protein -
  AJGP001_RS11100 (AJGP001_11135) - 2185243..2186043 (-) 801 WP_058384969.1 YmfK family protein -
  AJGP001_RS11105 (AJGP001_11140) - 2186534..2187253 (-) 720 WP_078080550.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38467.72 Da        Isoelectric Point: 5.2089

>NTDB_id=215250 AJGP001_RS11080 WP_058384973.1 2181216..2182286(-) (recA) [Planococcus faecalis strain AJ003]
MSDRKAALDMALKQIEKQFGKGSVMKLGEKTDRNISSVSSGSLALDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDMEIIQKSGSWYSYNEERIGQGRENVKQFLLKNPEIRNEISNK
IRESSGMEAATYTIAGNKDTAEDFNLLMDEDDSSGK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=215250 AJGP001_RS11080 WP_058384973.1 2181216..2182286(-) (recA) [Planococcus faecalis strain AJ003]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCGTTAAAACAAATAGAAAAGCAATTCGGTAAAGGTTCTGTCATGAAATT
AGGAGAAAAAACCGACCGTAATATATCATCCGTTTCAAGTGGTTCTTTGGCATTGGATACAGCGTTAGGAATAGGCGGAT
ATCCACGTGGGCGTGTCATTGAAATATACGGCCCGGAAAGTTCAGGTAAAACAACAGTTTCTCTTCATGCTATTGCCGAA
GTTCAAGCGACAGGCGGAACAGCAGCATTTATTGATGCAGAGCATGCATTAGATCCTGTTTACGCAAAAAATTTAGGTGT
TAACATTGATGAATTATTGCTTTCTCAACCGGATACTGGCGAGCAAGCACTTGAAATTGCCGAAGCACTTGTTCGAAGTG
GAGCAGTTGATATCGTCGTTGTCGATTCAGTAGCAGCATTAGTACCAAAAGCTGAAATTGAAGGCGAAATGGGCGATTCT
CATATGGGGTTACAGGCACGTTTAATGTCTCAAGCTCTTCGTAAATTGTCTGGTGTCATCAACAAATCAAATACAATCGT
TATTTTCATTAACCAAATTCGCGAAAAAATTGGTGTGATGTTCGGTAACCCAGAAACCACTCCTGGTGGTCGTGCATTGA
AATTCTATTCATCTGTCCGTCTAGAAGTCCGTCGTGCAGAAGCATTGAAATCGGGAACTGAAATTATCGGTAACAGAACA
AAAATAAAAGTAGTAAAAAACAAAGTAGCTCCACCGTTCCGTACAGCTGAGGTTGATATTATGTACGGAAAAGGAATTTC
ACGAGAAGGTGAAATTGTCGATATCGGTTCTGACATGGAAATTATTCAAAAGAGCGGTTCATGGTATTCTTATAATGAAG
AAAGAATCGGTCAAGGTCGTGAAAATGTTAAGCAATTCTTGCTTAAAAATCCAGAAATTCGCAATGAAATCTCTAATAAA
ATTCGTGAATCTTCTGGAATGGAAGCAGCAACTTATACAATTGCCGGAAACAAAGATACAGCAGAAGATTTTAACTTGTT
GATGGATGAAGACGACTCGTCAGGCAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.537

92.135

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

74.462

91.292

0.68
  recA Streptococcus mutans UA159

65.374

100

0.663
  recA Streptococcus pyogenes NZ131

69.538

91.292

0.635
  recA Glaesserella parasuis strain SC1401

63.559

99.438

0.632
  recA Acinetobacter baylyi ADP1

64.368

97.753

0.629
  recA Streptococcus pneumoniae Rx1

66.97

92.697

0.621
  recA Streptococcus pneumoniae D39

66.97

92.697

0.621
  recA Streptococcus pneumoniae R6

66.97

92.697

0.621
  recA Streptococcus pneumoniae TIGR4

66.97

92.697

0.621
  recA Neisseria gonorrhoeae MS11

66.97

92.697

0.621
  recA Neisseria gonorrhoeae MS11

66.97

92.697

0.621
  recA Neisseria gonorrhoeae strain FA1090

66.97

92.697

0.621
  recA Streptococcus mitis SK321

66.97

92.697

0.621
  recA Streptococcus mitis NCTC 12261

66.97

92.697

0.621
  recA Lactococcus lactis subsp. cremoris KW2

65.455

92.697

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.905

94.944

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.549

92.135

0.604
  recA Ralstonia pseudosolanacearum GMI1000

68.371

87.921

0.601
  recA Acinetobacter baumannii D1279779

65.732

90.169

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

90.169

0.59
  recA Vibrio cholerae strain A1552

65.421

90.169

0.59
  recA Pseudomonas stutzeri DSM 10701

65.625

89.888

0.59
  recA Helicobacter pylori 26695

64

91.292

0.584
  recA Helicobacter pylori strain NCTC11637

64

91.292

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

89.888

0.556

Multiple sequence alignment