Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AJGP001_RS11085 Genome accession   NZ_CP019401
Coordinates   2182461..2183714 (-) Length   417 a.a.
NCBI ID   WP_071154161.1    Uniprot ID   -
Organism   Planococcus faecalis strain AJ003     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2177461..2188714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS11065 (AJGP001_11100) - 2177718..2178146 (-) 429 WP_058384975.1 RicAFT regulatory complex protein RicA family protein -
  AJGP001_RS11070 (AJGP001_11105) - 2178436..2179233 (-) 798 WP_058386876.1 TIGR00282 family metallophosphoesterase -
  AJGP001_RS11075 (AJGP001_11110) rny 2179299..2180855 (-) 1557 WP_058384974.1 ribonuclease Y -
  AJGP001_RS11080 (AJGP001_11115) recA 2181216..2182286 (-) 1071 WP_058384973.1 recombinase RecA Machinery gene
  AJGP001_RS11085 (AJGP001_11120) cinA 2182461..2183714 (-) 1254 WP_071154161.1 competence/damage-inducible protein A Machinery gene
  AJGP001_RS11090 (AJGP001_11125) pgsA 2183739..2184317 (-) 579 WP_071154160.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AJGP001_RS11095 (AJGP001_11130) - 2184368..2185225 (-) 858 WP_071154159.1 RodZ domain-containing protein -
  AJGP001_RS11100 (AJGP001_11135) - 2185243..2186043 (-) 801 WP_058384969.1 YmfK family protein -
  AJGP001_RS11105 (AJGP001_11140) - 2186534..2187253 (-) 720 WP_078080550.1 SDR family oxidoreductase -
  AJGP001_RS11110 (AJGP001_11145) - 2187250..2188551 (-) 1302 WP_071154158.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45340.60 Da        Isoelectric Point: 4.7518

>NTDB_id=215251 AJGP001_RS11085 WP_071154161.1 2182461..2183714(-) (cinA) [Planococcus faecalis strain AJ003]
MNAEIIAVGSELLLGQITNTNARFLSNHLAELGINVYYHTVVGDNAARLEDAINIAESRADLILFTGGLGPTKDDLTKES
IAKHLDTTLEMNGEALDSIVAFFERAGRPMTENNKKQALVLKDSEVLVNYNGMAPGMMYKKEDRVYILLPGPPKEMEPMF
QFEAKPKLAHLLNKADVILSHVLRFYGIGEAELEDRLHSILDKQTNPTIAPLAADGEVTLRITAKTNTTEEAWQLINGAR
DEILDVVGDYLYGYDNDSLASKAIELLTEQGKTISAAESLTAGLFQSELASVPGASAVLSGGVITYNEEMKVHQLGLSAE
LLAEYGVVSEQTALAMAEAVREKFKTDISVSLTGAAGPDAHGDQPAGTVWIGIATKQGSQSYRLQLSGMRNTNRLRAVKL
ALHYVIRILTEEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=215251 AJGP001_RS11085 WP_071154161.1 2182461..2183714(-) (cinA) [Planococcus faecalis strain AJ003]
ATGAACGCAGAAATTATTGCTGTCGGTTCAGAATTGTTATTAGGTCAAATCACCAATACAAATGCTCGTTTTCTATCCAA
TCATTTAGCAGAACTCGGTATTAATGTGTATTACCACACGGTAGTCGGCGACAATGCCGCTCGGTTGGAAGATGCCATTA
ACATAGCGGAAAGCCGCGCCGACCTTATTTTATTCACAGGTGGGCTTGGTCCAACTAAAGACGATTTGACAAAAGAGTCT
ATCGCTAAACACCTAGACACAACGCTCGAAATGAATGGAGAAGCACTCGACTCAATCGTTGCTTTTTTTGAACGTGCAGG
GCGTCCAATGACCGAAAACAATAAAAAACAAGCATTGGTTTTAAAAGATAGTGAAGTTCTCGTCAATTATAATGGAATGG
CACCGGGTATGATGTACAAAAAAGAAGACCGTGTTTATATCTTATTGCCTGGTCCACCAAAAGAGATGGAGCCCATGTTC
CAATTCGAAGCAAAGCCAAAGCTCGCGCATTTATTGAACAAAGCAGATGTCATTTTATCGCATGTATTGCGTTTTTACGG
CATCGGTGAAGCTGAACTAGAAGATCGATTGCATTCTATTCTTGATAAGCAAACAAACCCAACGATCGCACCATTGGCAG
CAGATGGAGAAGTAACGCTGCGCATTACAGCTAAGACCAATACGACAGAAGAAGCTTGGCAATTGATCAATGGCGCTAGA
GATGAAATTTTAGATGTAGTGGGCGATTACCTTTATGGCTACGATAACGATTCGCTAGCTTCCAAAGCAATCGAGCTACT
AACTGAACAAGGGAAGACAATTTCAGCAGCAGAAAGTTTAACTGCTGGGCTCTTTCAGTCTGAATTGGCTTCAGTACCAG
GTGCGAGTGCTGTGCTATCCGGCGGCGTTATTACCTATAATGAAGAAATGAAAGTTCACCAGCTTGGACTGTCAGCTGAA
TTGCTTGCTGAATATGGAGTCGTTAGTGAACAAACGGCATTGGCTATGGCAGAAGCGGTACGAGAAAAATTCAAAACGGA
TATTAGCGTTTCACTGACTGGTGCAGCAGGACCAGATGCACACGGGGATCAGCCAGCAGGTACTGTATGGATAGGCATTG
CCACTAAACAAGGTTCTCAGTCTTACCGTCTTCAGTTGTCCGGTATGCGCAATACCAATCGTTTGCGGGCTGTTAAATTG
GCACTCCATTATGTAATTCGTATATTAACTGAAGAAGATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.488

98.321

0.496
  cinA Streptococcus pneumoniae Rx1

44.893

100

0.453
  cinA Streptococcus pneumoniae R6

44.893

100

0.453
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.453
  cinA Streptococcus mitis SK321

45.107

100

0.453
  cinA Streptococcus pneumoniae D39

44.656

100

0.451
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.451
  cinA Streptococcus mutans UA159

45.192

99.76

0.451
  cinA Streptococcus suis isolate S10

39.286

94.005

0.369

Multiple sequence alignment