Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Tchl_RS07645 Genome accession   NZ_CP018839
Coordinates   1648218..1649258 (-) Length   346 a.a.
NCBI ID   WP_075147873.1    Uniprot ID   -
Organism   Thauera chlorobenzoica strain 3CB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643218..1654258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tchl_RS07615 (Tchl_1528) hprK 1643699..1644646 (-) 948 WP_075147867.1 HPr(Ser) kinase/phosphatase -
  Tchl_RS07620 (Tchl_1529) ptsN 1644615..1645100 (-) 486 WP_075147868.1 PTS IIA-like nitrogen regulatory protein PtsN -
  Tchl_RS07625 (Tchl_1530) hpf 1645237..1645560 (-) 324 WP_075147869.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  Tchl_RS07630 (Tchl_1531) rpoN/rpoN1 1645578..1647017 (-) 1440 WP_075147870.1 RNA polymerase factor sigma-54 Machinery gene
  Tchl_RS07635 (Tchl_1532) lptB 1647040..1647765 (-) 726 WP_075147871.1 LPS export ABC transporter ATP-binding protein -
  Tchl_RS07640 (Tchl_1533) - 1647752..1648201 (-) 450 WP_075147872.1 regulatory protein RecX -
  Tchl_RS07645 (Tchl_1534) recA 1648218..1649258 (-) 1041 WP_075147873.1 recombinase RecA Machinery gene
  Tchl_RS07650 (Tchl_1535) - 1649518..1650006 (-) 489 WP_075147874.1 CinA family protein -
  Tchl_RS07655 (Tchl_1536) - 1650059..1650541 (-) 483 WP_075147875.1 phosphatidylglycerophosphatase A -
  Tchl_RS07660 (Tchl_1537) thiL 1650709..1651710 (-) 1002 WP_075147876.1 thiamine-phosphate kinase -
  Tchl_RS07665 (Tchl_1538) - 1651862..1652395 (-) 534 WP_075147877.1 SCP2 domain-containing protein -
  Tchl_RS07670 (Tchl_1539) - 1652467..1653363 (-) 897 WP_075147878.1 U32 family peptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36814.16 Da        Isoelectric Point: 5.5441

>NTDB_id=210887 Tchl_RS07645 WP_075147873.1 1648218..1649258(-) (recA) [Thauera chlorobenzoica strain 3CB1]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNIEDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGS
ETRVKVVKNKVAPPFKEAHFDILYGEGISREGEIIDLGVDHKIVDKSGAWYAYQGDKIGQGKDNSREFLRNNPALAREIE
NKVRAAVGLPGLAATGVQPAAAAAEA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=210887 Tchl_RS07645 WP_075147873.1 1648218..1649258(-) (recA) [Thauera chlorobenzoica strain 3CB1]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTTTCGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
CATGGGCGACGGCAACGTCGAACGCGACATCCAGACCGTGTCCACCGGCTCGCTCGGGCTCGACATCGCGCTGGGCCTCG
GCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCCGAATCCTCGGGCAAGACCACGCTGACGCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCGGCCTTCATCGACGCCGAACACGCGCTCGACGTCGGCTACGCCGAAAAGCT
CGGCGTGAACATCGAAGACCTGCTGATCTCCCAGCCCGACACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGGGTCGACATCGTCGTCATCGACTCGGTCGCGGCGCTCACCCCGAAGGCGGAGATCGAGGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAACTCACCGCCAACATCAAGCGCACCAACAC
CCTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGGATGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAGGTCGTCGGCTCC
GAAACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCCCCGTTCAAGGAAGCGCATTTCGACATCCTCTACGGCGAAGG
GATCTCGCGCGAGGGCGAGATCATCGACCTCGGCGTCGACCACAAGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCAACAACCCGGCGCTCGCGCGCGAAATCGAG
AACAAGGTGCGCGCCGCGGTCGGCCTGCCCGGGCTGGCGGCGACAGGCGTGCAGCCGGCCGCGGCCGCGGCCGAGGCCTG
A

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.759

92.197

0.763
  recA Pseudomonas stutzeri DSM 10701

73.314

98.555

0.723
  recA Neisseria gonorrhoeae strain FA1090

71.006

97.688

0.694
  recA Neisseria gonorrhoeae MS11

71.006

97.688

0.694
  recA Neisseria gonorrhoeae MS11

71.006

97.688

0.694
  recA Acinetobacter baylyi ADP1

73.148

93.642

0.685
  recA Vibrio cholerae strain A1552

73.148

93.642

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.148

93.642

0.685
  recA Acinetobacter baumannii D1279779

72.84

93.642

0.682
  recA Glaesserella parasuis strain SC1401

70.497

93.064

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.988

94.798

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.165

96.243

0.627
  recA Helicobacter pylori strain NCTC11637

65.046

95.087

0.619
  recA Helicobacter pylori 26695

65.046

95.087

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.087

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

63.303

94.509

0.598
  recA Streptococcus mutans UA159

60.725

95.665

0.581
  recA Streptococcus mitis SK321

61.094

95.087

0.581
  recA Streptococcus mitis NCTC 12261

61.094

95.087

0.581
  recA Streptococcus pneumoniae D39

61.094

95.087

0.581
  recA Streptococcus pneumoniae R6

61.094

95.087

0.581
  recA Streptococcus pneumoniae TIGR4

61.094

95.087

0.581
  recA Streptococcus pneumoniae Rx1

61.094

95.087

0.581
  recA Streptococcus pyogenes NZ131

60.303

95.376

0.575
  recA Lactococcus lactis subsp. cremoris KW2

60.856

94.509

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

93.642

0.558

Multiple sequence alignment