Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   BSR19_RS00375 Genome accession   NZ_CP018187
Coordinates   64531..65670 (+) Length   379 a.a.
NCBI ID   WP_060972897.1    Uniprot ID   A0AB37D7P9
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 59531..70670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS00355 (BSR19_00355) - 61597..61818 (+) 222 WP_037597288.1 hypothetical protein -
  BSR19_RS00360 (BSR19_00360) ruvA 61975..62565 (+) 591 WP_060972894.1 Holliday junction branch migration protein RuvA -
  BSR19_RS00365 (BSR19_00365) - 62574..63128 (+) 555 WP_060972895.1 DNA-3-methyladenine glycosylase I -
  BSR19_RS00370 (BSR19_00370) cinA 63225..64490 (+) 1266 WP_060972896.1 competence/damage-inducible protein A Machinery gene
  BSR19_RS00375 (BSR19_00375) recA 64531..65670 (+) 1140 WP_060972897.1 recombinase RecA Machinery gene
  BSR19_RS00380 (BSR19_00380) spx 65840..66238 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 40897.42 Da        Isoelectric Point: 4.8456

>NTDB_id=206822 BSR19_RS00375 WP_060972897.1 64531..65670(+) (recA) [Streptococcus salivarius strain ICDC2]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDSVEETQVEATSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=206822 BSR19_RS00375 WP_060972897.1 64531..65670(+) (recA) [Streptococcus salivarius strain ICDC2]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGATGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAGGTTCAGGTTATGA
GCTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCAGAACATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATCGATGAGCTTCTTTTATCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCTGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTTGGGCTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTATCTGCATCTATTAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACGACCCCTGGTGGACGTGCTCTGAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGATCAAAATGTTGGTAAGGAAACTAAAATCAAGGTTGTCAAAAACAA
AGTTGCCCCACCATTTAAAGAAGCCTTTGTCGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGATTTAGGAATTATTCAAAAAGCCGGAGCATGGTTCTCATATAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCTAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATAGTGTTGAAGAAACACAAGTTGAAGCAACATCTGATGAACTTGTTTTGGACCTTGATTCAA
CCATTGAAATTGAAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902

  recA Streptococcus pyogenes NZ131

89.974

100

0.9

  recA Streptococcus pneumoniae R6

85.195

100

0.865

  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865

  recA Streptococcus pneumoniae Rx1

85.195

100

0.865

  recA Streptococcus pneumoniae D39

85.195

100

0.865

  recA Streptococcus mitis NCTC 12261

86.089

100

0.865

  recA Streptococcus mitis SK321

86.089

100

0.865

  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72

  recA Latilactobacillus sakei subsp. sakei 23K

67.33

92.876

0.625

  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594

  recA Glaesserella parasuis strain SC1401

56.216

97.625

0.549

  recA Neisseria gonorrhoeae MS11

58.974

92.612

0.546

  recA Neisseria gonorrhoeae MS11

58.974

92.612

0.546

  recA Neisseria gonorrhoeae strain FA1090

58.974

92.612

0.546

  recA Acinetobacter baylyi ADP1

59.71

91.029

0.544

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541

  recA Vibrio cholerae strain A1552

58.671

91.293

0.536

  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.671

91.293

0.536

  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515

  recA Helicobacter pylori strain NCTC11637

55.331

91.557

0.507

  recA Helicobacter pylori 26695

55.331

91.557

0.507

  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499

  recA Ralstonia pseudosolanacearum GMI1000

59.306

83.641

0.496


Multiple sequence alignment