Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BP422_RS12730 Genome accession   NZ_CP018145
Coordinates   2784594..2785652 (-) Length   352 a.a.
NCBI ID   WP_088908051.1    Uniprot ID   A0A220MH17
Organism   Brevibacillus formosus strain NF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2779594..2790652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS12705 (BP422_12355) - 2779738..2780676 (-) 939 WP_088908048.1 dipeptidase -
  BP422_RS12710 (BP422_12360) spoVS 2780785..2781045 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  BP422_RS12715 (BP422_12365) - 2781164..2781958 (-) 795 WP_088908049.1 TIGR00282 family metallophosphoesterase -
  BP422_RS12720 (BP422_12370) rny 2782068..2783609 (-) 1542 WP_007719154.1 ribonuclease Y -
  BP422_RS12725 (BP422_12375) - 2783883..2784524 (-) 642 WP_088908050.1 RecX family transcriptional regulator -
  BP422_RS12730 (BP422_12380) recA 2784594..2785652 (-) 1059 WP_088908051.1 recombinase RecA Machinery gene
  BP422_RS12735 (BP422_12385) - 2785819..2787408 (-) 1590 WP_088908052.1 DEAD/DEAH box helicase -
  BP422_RS12740 (BP422_12390) cinA 2787417..2788661 (-) 1245 WP_088908053.1 competence/damage-inducible protein A Machinery gene
  BP422_RS12745 (BP422_12395) pgsA 2788769..2789345 (-) 577 Protein_2537 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37895.11 Da        Isoelectric Point: 4.9005

>NTDB_id=206368 BP422_RS12730 WP_088908051.1 2784594..2785652(-) (recA) [Brevibacillus formosus strain NF2]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPETEPVNDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=206368 BP422_RS12730 WP_088908051.1 2784594..2785652(-) (recA) [Brevibacillus formosus strain NF2]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAGATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
GGGGGAAGTTTCCAACGTTCAGATTTCTACTGTATCGAGCGGAGCGCTTGCTCTTGATATCGCACTTGGTGTGGGCGGAT
TCCCACGTGGACGGATTATTGAGATTTACGGACCAGAGTCTTCTGGTAAAACAACAGTAGCACTTCATGCGATCGCAGAG
GTGCAAAGACAAGGCGGACAGGCTGCGTTTATCGATGCTGAGCATGCCTTGGATCCGGTTTACGCTGCAAAGCTGGGTGT
GAACATCGACGAATTGCTGTTGTCCCAACCAGACACTGGTGAGCAAGCGTTGGAGATCGCGGAAGCACTGGTGCGTTCGG
GTGCAGTAGACATTATCGTAGTCGACTCCGTTGCGGCACTCGTGCCAAAAGCAGAGATCGAGGGCGAGATGGGAGATTCC
CACGTAGGTTTGCAAGCACGCTTGATGTCCCAAGCACTCCGCAAGCTGTCTGGTGCCATCAACAAGTCCAAAACGATTGC
GATCTTCATCAACCAGCTTCGCGAAAAAGTGGGAGTTATGTTCGGTAACCCGGAAACAACGCCGGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGATGTTCGTAAAGCGGAATCTATCAAAGTCGGTAACGACATTTTGGGTAGCAAGACG
AAGATCAAAGTTGTCAAAAATAAAGTGGCTCCACCATTTAAGGTTGCAGAAGTGGACATTATGTACGGCGAAGGTATTTC
TAGAGAAGGTAGCATTCTCGACATCGGTTCTGAAATTGATGTGGTTCAAAAGAGTGGTGCGTGGTATTCCTTCAATGAAG
AGCGCCTCGGCCAAGGTAGAGAAAATTCGAAGGTCTTCCTGAAGGAAAATCCGCACATTGCATCCCAGATTGAAACAAAA
GTGCGCGAATACTTCAGTCTGAACCCTGGCTCTGTTCCAGAAACTGAGCCGGTAAATGACCCAGAGCAAGATGAAGAGCC
TACATTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220MH17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.928

94.318

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

97.159

0.687
  recA Streptococcus mitis SK321

65.565

100

0.676
  recA Streptococcus pneumoniae Rx1

67.33

100

0.673
  recA Streptococcus pneumoniae D39

67.33

100

0.673
  recA Streptococcus pneumoniae R6

67.33

100

0.673
  recA Streptococcus pneumoniae TIGR4

67.33

100

0.673
  recA Streptococcus mitis NCTC 12261

66.572

100

0.668
  recA Streptococcus mutans UA159

65.254

100

0.656
  recA Streptococcus pyogenes NZ131

70.336

92.898

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae strain FA1090

62.717

98.295

0.616
  recA Ralstonia pseudosolanacearum GMI1000

66.361

92.898

0.616
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Acinetobacter baumannii D1279779

60.857

99.432

0.605
  recA Glaesserella parasuis strain SC1401

64.134

93.466

0.599
  recA Pseudomonas stutzeri DSM 10701

60.35

97.443

0.588
  recA Acinetobacter baylyi ADP1

62.577

92.614

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Helicobacter pylori 26695

58.772

97.159

0.571
  recA Helicobacter pylori strain NCTC11637

58.48

97.159

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565

Multiple sequence alignment