Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BP422_RS12740 Genome accession   NZ_CP018145
Coordinates   2787417..2788661 (-) Length   414 a.a.
NCBI ID   WP_088908053.1    Uniprot ID   A0A220MGY1
Organism   Brevibacillus formosus strain NF2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2782417..2793661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS12725 (BP422_12375) - 2783883..2784524 (-) 642 WP_088908050.1 RecX family transcriptional regulator -
  BP422_RS12730 (BP422_12380) recA 2784594..2785652 (-) 1059 WP_088908051.1 recombinase RecA Machinery gene
  BP422_RS12735 (BP422_12385) - 2785819..2787408 (-) 1590 WP_088908052.1 DEAD/DEAH box helicase -
  BP422_RS12740 (BP422_12390) cinA 2787417..2788661 (-) 1245 WP_088908053.1 competence/damage-inducible protein A Machinery gene
  BP422_RS12745 (BP422_12395) pgsA 2788769..2789345 (-) 577 Protein_2537 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BP422_RS12750 (BP422_12400) rimO 2789346..2790692 (-) 1347 WP_088908054.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BP422_RS12755 (BP422_12405) - 2790803..2791699 (-) 897 WP_088908055.1 helix-turn-helix domain-containing protein -
  BP422_RS12760 (BP422_12410) - 2791712..2792492 (-) 781 Protein_2540 DUF3388 domain-containing protein -
  BP422_RS12765 (BP422_12415) - 2792601..2792870 (-) 270 WP_088908056.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44898.40 Da        Isoelectric Point: 5.0872

>NTDB_id=206369 BP422_RS12740 WP_088908053.1 2787417..2788661(-) (cinA) [Brevibacillus formosus strain NF2]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
LAGHVGIELETNSEAMERIEKFFSQRGIVMTENNRKQALVLAGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSELYPMV
ENYVMPYLTDLLPDKQVFHSHVLRFYGIGESALEEKLLDLIEKQDNPTIAPYAKEFEVTLRITARAATVEEGEALILPVE
KEILSRVGQYMYGMGENSSLHDVLVSELKKRNETIACAESCTGGTIASLITSVPGSSQVFRGGVVCYTNEGKNQLLEVPD
SILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGLVYVGIAAEGMATVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=206369 BP422_RS12740 WP_088908053.1 2787417..2788661(-) (cinA) [Brevibacillus formosus strain NF2]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAGCTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGAGTGGGAGTATACTTTCATACGGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGGCGATCTGATCTCGTCATTTTCACGGGTGGGCTAGGCCCGACTCAAGATGATTTGACGAAAGAGACC
TTGGCGGGGCATGTAGGCATTGAATTGGAAACGAATTCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTCGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTGCTGGCAGCCATGTATTCTCCAATGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTGTTGCCGGGACCACCAAGTGAGCTGTATCCAATGGTG
GAGAATTACGTGATGCCTTACTTGACTGATTTGCTCCCCGATAAACAAGTGTTTCATTCTCATGTACTCCGGTTCTACGG
AATAGGCGAATCCGCCTTGGAGGAAAAACTGCTCGATCTGATCGAAAAGCAGGACAATCCAACGATCGCGCCATACGCCA
AAGAATTCGAAGTAACGCTGCGGATTACGGCAAGAGCTGCTACAGTCGAAGAAGGGGAAGCCCTAATCTTGCCTGTAGAA
AAAGAAATTCTCAGCCGTGTTGGCCAGTATATGTACGGGATGGGGGAGAACTCGTCACTGCATGATGTGCTGGTTTCTGA
GCTGAAAAAGAGAAATGAGACGATTGCTTGTGCAGAAAGCTGCACTGGAGGAACAATTGCCTCGTTGATTACCTCTGTAC
CAGGAAGCTCGCAAGTGTTTCGTGGCGGGGTAGTCTGCTATACCAATGAAGGGAAGAATCAGCTGCTCGAAGTACCTGAT
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAGAAAACAGCTCAATTGCTGGCTGAACATGTACGAGAAAAGCTGGGAGC
TACTTACGGGATTTCTGTTACGGGAGTAGCTGGACCCGATCCATCCGAGGGCAAGCCTGTTGGTCTTGTTTACGTAGGGA
TCGCGGCAGAAGGAATGGCCACAGTTGTAAAAGAGCTGCGCCTTGCTGGAAGAAGGCATGCAATCGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220MGY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

49.01

97.585

0.478
  cinA Streptococcus mitis NCTC 12261

48.762

97.585

0.476
  cinA Streptococcus pneumoniae TIGR4

48.267

97.585

0.471
  cinA Streptococcus pneumoniae Rx1

48.02

97.585

0.469
  cinA Streptococcus pneumoniae R6

48.02

97.585

0.469
  cinA Streptococcus pneumoniae D39

47.772

97.585

0.466
  cinA Streptococcus mutans UA159

46.617

96.377

0.449
  cinA Streptococcus suis isolate S10

41.772

95.411

0.399

Multiple sequence alignment