Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PPYC1_RS10385 Genome accession   NZ_CP017967
Coordinates   2339366..2340427 (+) Length   353 a.a.
NCBI ID   WP_023988239.1    Uniprot ID   A0A074LU12
Organism   Paenibacillus polymyxa strain YC0136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2334366..2345427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPYC1_RS10365 (PPYC1_14015) - 2335013..2336077 (+) 1065 WP_071640549.1 RodZ domain-containing protein -
  PPYC1_RS24995 - 2336162..2336326 (+) 165 WP_023988236.1 hypothetical protein -
  PPYC1_RS10370 (PPYC1_14010) - 2336471..2336962 (+) 492 WP_025722076.1 YajQ family cyclic di-GMP-binding protein -
  PPYC1_RS10375 (PPYC1_14005) pgsA 2337173..2337760 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPYC1_RS10380 (PPYC1_14000) cinA 2337856..2339124 (+) 1269 WP_071640551.1 competence/damage-inducible protein A Machinery gene
  PPYC1_RS10385 (PPYC1_13995) recA 2339366..2340427 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  PPYC1_RS10390 (PPYC1_13990) - 2340624..2341373 (+) 750 WP_071640553.1 regulatory protein RecX -
  PPYC1_RS10395 (PPYC1_13985) rny 2341747..2343291 (+) 1545 WP_013309958.1 ribonuclease Y -
  PPYC1_RS10400 (PPYC1_13980) - 2343368..2344162 (+) 795 WP_013309959.1 TIGR00282 family metallophosphoesterase -
  PPYC1_RS10405 (PPYC1_13975) - 2344291..2344551 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38204.53 Da        Isoelectric Point: 5.0863

>NTDB_id=204543 PPYC1_RS10385 WP_023988239.1 2339366..2340427(+) (recA) [Paenibacillus polymyxa strain YC0136]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTVAPPTEEELAQQAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=204543 PPYC1_RS10385 WP_023988239.1 2339366..2340427(+) (recA) [Paenibacillus polymyxa strain YC0136]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCTACCCACATGCAAGTGGAAACGATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGGTTATTGAAATATACGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCACGCTATCGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGACGCCGAGCATGCGCTTGATCCGTCGTATGCAAGCAAGCTGGGCGT
CAATATTGATGAGTTGTTACTATCGCAACCAGATACAGGAGAGCAGGCGCTTGAGATTGCCGAAGCTCTTGTACGTAGTG
GAGCAGTAGACATTGTAGTTGTTGACTCCGTAGCGGCACTTGTGCCCAAGGCAGAGATTGAAGGCGAAATGGGAGATTCC
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAGGCATTGCGTAAGCTTTCTGGAGCCATTAATAAGTCGAAAACCATTGC
TATTTTTATTAACCAGCTACGTGAAAAAGTAGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGTGGACGTGCCTTGA
AGTTTTACTCTACGGTGCGTTTGGATGTTCGTCGTATTGAAAGTTTGAAAATGGGTAACGACATTGTGGGTAACCGCACA
CGTATTAAAGTCGTGAAGAACAAAGTTGCCCCTCCTTTCCGTCAGGCTGAGGTGGATATTATGTACGGTGAGGGCATTTC
CAAAGAAGGTAGCTTGATCGACATCGGTACGGAGCATGACATTGTCGACAAGAGCGGAGCCTGGTATTCCTACGAAGGTG
AGCGCCTTGGTCAGGGACGTGAGAATGCTAAGCAATTTTTGAAGGAAAATCCGAATATTGCTAGTACGATCGAACAAAAA
ATTCGGGTGGCCAGCAATTTGATTACGACGGTTGCTCCGCCTACAGAAGAAGAGTTGGCACAGCAAGCGAAGGAAGAACA
GGAATTGTTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A074LU12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.404

91.218

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

71.681

96.034

0.688
  recA Streptococcus mitis NCTC 12261

67.049

98.867

0.663
  recA Streptococcus mutans UA159

66.286

99.15

0.657
  recA Streptococcus pneumoniae D39

66.097

99.433

0.657
  recA Streptococcus pneumoniae TIGR4

66.097

99.433

0.657
  recA Streptococcus pneumoniae Rx1

66.097

99.433

0.657
  recA Streptococcus pneumoniae R6

66.097

99.433

0.657
  recA Streptococcus mitis SK321

67.052

98.017

0.657
  recA Streptococcus pyogenes NZ131

69.231

92.068

0.637
  recA Lactococcus lactis subsp. cremoris KW2

67.069

93.768

0.629
  recA Neisseria gonorrhoeae MS11

64.671

94.618

0.612
  recA Neisseria gonorrhoeae MS11

64.671

94.618

0.612
  recA Neisseria gonorrhoeae strain FA1090

64.671

94.618

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

90.652

0.606
  recA Vibrio cholerae strain A1552

66.875

90.652

0.606
  recA Acinetobacter baylyi ADP1

60.795

99.717

0.606
  recA Pseudomonas stutzeri DSM 10701

62.463

96.601

0.603
  recA Glaesserella parasuis strain SC1401

60.571

99.15

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

90.935

0.595
  recA Ralstonia pseudosolanacearum GMI1000

67.857

87.252

0.592
  recA Acinetobacter baumannii D1279779

63.415

92.918

0.589
  recA Helicobacter pylori 26695

61.243

95.751

0.586
  recA Helicobacter pylori strain NCTC11637

60.947

95.751

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.577

92.351

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

91.501

0.552

Multiple sequence alignment