Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PPYC1_RS10380 Genome accession   NZ_CP017967
Coordinates   2337856..2339124 (+) Length   422 a.a.
NCBI ID   WP_071640551.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YC0136     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2332856..2344124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPYC1_RS10350 (PPYC1_14030) ymfI 2332857..2333624 (+) 768 WP_071640547.1 elongation factor P 5-aminopentanone reductase -
  PPYC1_RS10355 (PPYC1_14025) - 2333727..2333981 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  PPYC1_RS10360 (PPYC1_14020) - 2334209..2334982 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  PPYC1_RS10365 (PPYC1_14015) - 2335013..2336077 (+) 1065 WP_071640549.1 RodZ domain-containing protein -
  PPYC1_RS24995 - 2336162..2336326 (+) 165 WP_023988236.1 hypothetical protein -
  PPYC1_RS10370 (PPYC1_14010) - 2336471..2336962 (+) 492 WP_025722076.1 YajQ family cyclic di-GMP-binding protein -
  PPYC1_RS10375 (PPYC1_14005) pgsA 2337173..2337760 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPYC1_RS10380 (PPYC1_14000) cinA 2337856..2339124 (+) 1269 WP_071640551.1 competence/damage-inducible protein A Machinery gene
  PPYC1_RS10385 (PPYC1_13995) recA 2339366..2340427 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  PPYC1_RS10390 (PPYC1_13990) - 2340624..2341373 (+) 750 WP_071640553.1 regulatory protein RecX -
  PPYC1_RS10395 (PPYC1_13985) rny 2341747..2343291 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46356.31 Da        Isoelectric Point: 4.7700

>NTDB_id=204542 PPYC1_RS10380 WP_071640551.1 2337856..2339124(+) (cinA) [Paenibacillus polymyxa strain YC0136]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAAMFQGGIVCYSNEMKMKLLNVP
YDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=204542 PPYC1_RS10380 WP_071640551.1 2337856..2339124(+) (cinA) [Paenibacillus polymyxa strain YC0136]
ATGAAAGCTGAAATAATTGCAGTAGGTACAGAGTTATTGCTCGGTCAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCTACAATCGGAATCGATGTATATTTTCAGACTGTAGTTGGCGATAACATAGATCGGCTTCAGGAAGCAATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGACCGACTCAGGATGATTTGACGAAAGATGCG
ATAGCATCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGATAAGCTAGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGAGCTACTCCGCTTGAAAATGAGACGGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCAAGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACGGCT
ACCGAAGTAGAAATTCAGCAGCGTCTTTCGGAATATATGTATGCAAGCGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAGCGCGGACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGCTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTAGCTCTTGTGCTTGCAGAGCAGGCAAGAAT
GATCATGGACAGTGATTTTGGACTTTCAGTTACTGGTGTTGCCGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGACTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.882

100

0.462
  cinA Streptococcus suis isolate S10

45.078

91.469

0.412

Multiple sequence alignment