Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K08M4_RS02565 Genome accession   NZ_CP017916
Coordinates   514416..515456 (+) Length   346 a.a.
NCBI ID   WP_086048754.1    Uniprot ID   -
Organism   Vibrio syngnathi strain K08M4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 509416..520456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS02550 (K08M4_05030) rpoS 509971..510951 (+) 981 WP_086048752.1 RNA polymerase sigma factor RpoS Regulator
  K08M4_RS02555 (K08M4_05040) mutS 511096..513657 (-) 2562 WP_086048753.1 DNA mismatch repair protein MutS -
  K08M4_RS02560 (K08M4_05050) pncC 513782..514276 (+) 495 WP_086050375.1 nicotinamide-nucleotide amidase -
  K08M4_RS02565 (K08M4_05060) recA 514416..515456 (+) 1041 WP_086048754.1 recombinase RecA Machinery gene
  K08M4_RS02570 (K08M4_05070) - 515756..516556 (-) 801 WP_009847632.1 helix-turn-helix domain-containing protein -
  K08M4_RS02575 (K08M4_05080) - 516611..517672 (-) 1062 WP_232460218.1 ROK family protein -
  K08M4_RS02580 (K08M4_05090) - 517656..519494 (-) 1839 WP_086048756.1 glycoside hydrolase family 13 protein -
  K08M4_RS02585 (K08M4_05100) - 519504..520337 (-) 834 WP_029223077.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37284.78 Da        Isoelectric Point: 4.9843

>NTDB_id=204049 K08M4_RS02565 WP_086048754.1 514416..515456(+) (recA) [Vibrio syngnathi strain K08M4]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKGAEKEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=204049 K08M4_RS02565 WP_086048754.1 514416..515456(+) (recA) [Vibrio syngnathi strain K08M4]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCTATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTGGAGCTTATTGCT
GCAGCACAGAGAGTGGGCAAAACGTGTGCATTCGTTGATGCGGAGCACGCACTAGACCCTATCTACGCTCAAAAGTTGGG
TGTTGATATCGATGCTCTTCTTGTTTCTCAACCTGATACGGGTGAGCAAGCGCTTGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCTATCGACGTACTTGTTATTGACTCAGTAGCAGCACTAACACCTAAAGCAGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTGACTGGTAACCTCAAGCAGTCTAACTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTCGGTAACCCAGAAACAACAACCGGTGGTAACGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGCGCGATTAAAGATGGTGATGAAGTTGTTGGTAACGAA
ACTCGCATCAAGGTTGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAAACTCAAATCCTTTACGGCAAAGGCTT
CAACCGCGAAGGTGAGCTTATCGACTTAGGTGTTAAGAATAAGCTAGTAGAAAAAGCAGGCGCTTGGTACAGCTACAAAG
GCGACAAGATCGGCCAAGGTAAAGCTAACGCTGGTAAATACCTACGTGAAAACCCAGAAGTTGCTCTAGAAATTGATACT
AAACTTCGTGAGTTACTGCTAACTCCTGCTGTGCTTGAAGAGAAAGGTGCAGAGAAGGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.274

95.087

0.858
  recA Vibrio cholerae strain A1552

90.274

95.087

0.858
  recA Pseudomonas stutzeri DSM 10701

76.435

95.665

0.731
  recA Acinetobacter baumannii D1279779

72.174

99.711

0.72
  recA Acinetobacter baylyi ADP1

71.387

100

0.714
  recA Neisseria gonorrhoeae MS11

66.667

100

0.671
  recA Neisseria gonorrhoeae MS11

66.667

100

0.671
  recA Neisseria gonorrhoeae strain FA1090

66.667

100

0.671
  recA Glaesserella parasuis strain SC1401

66.86

99.422

0.665
  recA Ralstonia pseudosolanacearum GMI1000

71.111

91.04

0.647
  recA Streptococcus mutans UA159

58.166

100

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

92.197

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Helicobacter pylori strain NCTC11637

61.231

93.931

0.575
  recA Streptococcus pneumoniae Rx1

61.61

93.353

0.575
  recA Streptococcus pneumoniae R6

61.61

93.353

0.575
  recA Streptococcus mitis SK321

61.61

93.353

0.575
  recA Streptococcus pneumoniae TIGR4

61.61

93.353

0.575
  recA Streptococcus pneumoniae D39

61.61

93.353

0.575
  recA Helicobacter pylori 26695

60.923

93.931

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

58.235

98.266

0.572
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.665

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.775

0.566
  recA Streptococcus pyogenes NZ131

60

93.931

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.353

0.552

Multiple sequence alignment