Detailed information NTG0204047

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K08M4_RS02550
• Genome accession: NZ_CP017916
• Coordinates: 509971..510951 (+)
• Length: 326 a.a.
• NCBI ID: WP_086048752.1
• Uniprot ID: -
• Organism: Vibrio syngnathi strain K08M4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 504971..515951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K08M4_RS02520 (K08M4_04970)	ispD	505179..505880 (+)	702	WP_086048747.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K08M4_RS02525 (K08M4_04980)	ispF	505883..506362 (+)	480	WP_086048748.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K08M4_RS02530 (K08M4_04990)	truD	506385..507431 (+)	1047	WP_086048749.1	tRNA pseudouridine(13) synthase TruD	-
K08M4_RS02535 (K08M4_05000)	surE	507552..508295 (+)	744	WP_086048750.1	5'/3'-nucleotidase SurE	-
K08M4_RS02540 (K08M4_05010)	-	508296..508922 (+)	627	WP_086048751.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K08M4_RS02545 (K08M4_05020)	nlpD	508958..509872 (+)	915	WP_029225456.1	murein hydrolase activator NlpD	-
K08M4_RS02550 (K08M4_05030)	rpoS	509971..510951 (+)	981	WP_086048752.1	RNA polymerase sigma factor RpoS	Regulator
K08M4_RS02555 (K08M4_05040)	mutS	511096..513657 (-)	2562	WP_086048753.1	DNA mismatch repair protein MutS	-
K08M4_RS02560 (K08M4_05050)	pncC	513782..514276 (+)	495	WP_086050375.1	nicotinamide-nucleotide amidase	-
K08M4_RS02565 (K08M4_05060)	recA	514416..515456 (+)	1041	WP_086048754.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37219.41 Da
• Isoelectric Point: 5.2708

>NTDB_id=204047 K08M4_RS02550 WP_086048752.1 509971..510951(+) (rpoS) [Vibrio syngnathi strain K08M4]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVTKKTEAKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=204047 K08M4_RS02550 WP_086048752.1 509971..510951(+) (rpoS) [Vibrio syngnathi strain K08M4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAGACTGAAGTTACGTCTAAAAGCTTAGATGCGACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGTTTGATCCGCGCCGTAGAGAAATTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAATATCTACCTGCGTACGGCACGAGAGCTATCTCAAAAACTTGACCACGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCAGTCGGTGATGTGAGTAAGATGCTTCGTCTGAACGAAAGAGTAAGCT
CCGTTGATACACCTATCGGTGGTGACGGTGAGAAAGCGCTACTGGATATAATTCCTGACATCAACAACTCAGACCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCGTCAACATTAGAAGAAGTAGGTCGTGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.138	100	0.831