Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SMA_2112 Genome accession   HE613569
Coordinates   2053446..2054600 (-) Length   384 a.a.
NCBI ID   CCF03403.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2048446..2059600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_2106 - 2049570..2051159 (-) 1590 CCF03397.1 Competence-induced protein Ccs4 -
  SMA_2107 - 2051275..2051409 (-) 135 CCF03398.1 Hypothetical protein -
  SMA_2108 - 2051422..2051739 (-) 318 CCF03399.1 Hypothetical protein -
  SMA_2109 yggF 2051772..2052191 (-) 420 CCF03400.1 putative Holliday junction resolvase -
  SMA_2110 - 2052188..2052457 (-) 270 CCF03401.1 Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase -
  SMA_2111 spxA2 2052779..2053177 (-) 399 CCF03402.1 Transcriptional regulator SpxA2 -
  SMA_2112 recA 2053446..2054600 (-) 1155 CCF03403.1 RecA protein Machinery gene
  SMA_2113 cinA 2054650..2055909 (-) 1260 CCF03404.1 Competence/damage-inducible protein CinA Machinery gene
  SMA_2114 - 2056067..2056504 (-) 438 CCF03405.1 Facilitator superfamily protein -
  SMA_2115 - 2056443..2056673 (-) 231 CCF03406.1 Facilitator superfamily protein -
  SMA_2116 - 2056631..2057005 (-) 375 CCF03407.1 Facilitator superfamily protein -
  SMA_2117 - 2057387..2057689 (-) 303 CCF03408.1 Hypothetical protein -
  SMA_2118 - 2057708..2057851 (-) 144 CCF03409.1 Hypothetical protein -
  SMA_2119 - 2058112..2058768 (+) 657 CCF03410.1 Hypothetical protein -
  SMA_2120 ruvA 2058873..2059466 (-) 594 CCF03411.1 Holliday junction DNA helicase RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41252.87 Da        Isoelectric Point: 4.8577

>NTDB_id=20373 SMA_2112 CCF03403.1 2053446..2054600(-) (recA) [Streptococcus macedonicus ACA-DC 198]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKECGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNVGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADIVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=20373 SMA_2112 CCF03403.1 2053446..2054600(-) (recA) [Streptococcus macedonicus ACA-DC 198]
TTGGCTAAGAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCGCTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCTCTTGATATTGCTTTAGGTGCAGGTGGTTATCCTAAAGGGCGTATCATTGAAATCTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCGGTAGCACAAGCTCAAAAAGAATGTGGAATTGCTGCCTTTATCGA
TGCCGAACACGCACTTGATCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGATGAGCTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCTGTTGCT
GCCCTTGTACCTCGTGCCGAAATCGATGGTGACATTGGTGATAGTCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCTTCAATCAACAAAACAAAAACAATTGCGATTTTCATCAACCAGTTGCGTGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTCCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGTAATGTTGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCCGAAGTTGAAATTATGTATGGTGAGGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACTTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATACTTGGCAGAACACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTCGT
AGAAGAAACCGAAGATGAGAAAGCAGCAGATATTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAGGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

88.802

100

0.888
  recA Streptococcus mutans UA159

87.047

100

0.875
  recA Streptococcus pneumoniae R6

85.567

100

0.865
  recA Streptococcus pneumoniae Rx1

85.567

100

0.865
  recA Streptococcus pneumoniae D39

85.567

100

0.865
  recA Streptococcus pneumoniae TIGR4

85.567

100

0.865
  recA Streptococcus mitis NCTC 12261

86.458

100

0.865
  recA Streptococcus mitis SK321

86.458

100

0.865
  recA Lactococcus lactis subsp. cremoris KW2

78.857

91.146

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

66.027

95.052

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Acinetobacter baumannii D1279779

59.773

91.927

0.549
  recA Neisseria gonorrhoeae strain FA1090

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.767

88.281

0.536
  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.115

0.534
  recA Vibrio cholerae strain A1552

57.627

92.188

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.627

92.188

0.531
  recA Acinetobacter baylyi ADP1

59.706

88.542

0.529
  recA Pseudomonas stutzeri DSM 10701

57.061

90.365

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.198

0.505
  recA Helicobacter pylori strain NCTC11637

57.485

86.979

0.5
  recA Helicobacter pylori 26695

57.485

86.979

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment