Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPG_0042 Genome accession   CP001015
Coordinates   36141..36911 (+) Length   256 a.a.
NCBI ID   ACF55812.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31141..41911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0039 - 33196..33633 (+) 438 ACF55838.1 hypothetical protein -
  SPG_0040 - 33816..34826 (-) 1011 ACF56488.1 conserved hypothetical protein -
  SPG_0041 - 34975..36144 (+) 1170 ACF55212.1 aromatic amino acid aminotransferase -
  SPG_0042 recO 36141..36911 (+) 771 ACF55812.1 DNA repair protein RecO Machinery gene
  SPG_0043 - 36908..37900 (+) 993 ACF56169.1 fatty acid/phospholipid synthesis protein PlsX -
  SPG_0044 - 37906..38139 (+) 234 ACF54916.1 acyl carrier protein -
  SPG_0045 - 38182..38475 (+) 294 ACF55167.1 transposase -
  SPG_0046 - 38678..38908 (+) 231 ACF56710.1 conserved domain protein -
  SPG_0047 - 38911..39036 (+) 126 ACF56105.1 hypothetical protein -
  SPG_0048 comA 39623..41776 (+) 2154 ACF55423.1 transport/processing ATP-binding protein ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=20316 SPG_0042 ACF55812.1 36141..36911(+) (recO) [Streptococcus pneumoniae G54]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=20316 SPG_0042 ACF55812.1 36141..36911(+) (recO) [Streptococcus pneumoniae G54]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment