Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DN94_09020 Genome accession   CP007565
Coordinates   1764388..1765647 (-) Length   419 a.a.
NCBI ID   AHX75750.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759388..1770647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_08985 - 1759540..1761081 (-) 1542 AHX75744.1 membrane protein -
  DN94_08995 - 1761331..1761648 (-) 318 AHX75745.1 hypothetical protein -
  DN94_09000 - 1761674..1762084 (-) 411 AHX75746.1 Holliday junction resolvase -
  DN94_09005 - 1762093..1762359 (-) 267 AHX75747.1 hypothetical protein -
  DN94_09010 - 1762561..1762959 (-) 399 AHX75748.1 ArsR family transcriptional regulator -
  DN94_09015 recA 1763175..1764314 (-) 1140 AHX75749.1 recombinase RecA Machinery gene
  DN94_09020 cinA 1764388..1765647 (-) 1260 AHX75750.1 damage-inducible protein CinA Machinery gene
  DN94_09025 - 1765737..1766288 (-) 552 AHX75751.1 3-methyladenine DNA glycosylase -
  DN94_09030 - 1766311..1766901 (-) 591 AHX75752.1 ATP-dependent DNA helicase RuvA -
  DN94_09035 - 1766903..1768135 (-) 1233 AHX75753.1 MFS transporter -
  DN94_09040 - 1768167..1770140 (-) 1974 AHX75754.1 DNA mismatch repair protein MutL -
  DN94_09045 - 1770366..1770569 (+) 204 AHX75755.1 cold-shock protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45428.29 Da        Isoelectric Point: 6.3051

>NTDB_id=20317 DN94_09020 AHX75750.1 1764388..1765647(-) (cinA) [Streptococcus agalactiae strain 138spar]
MRAEIIAVGTEILTGQIVNTNAQFLSEKMAELGIDIYFQTAVGDNEGRLLSLLDIASQRSQLVILCGGLGPTEDDLTKQT
LAKFLGKSLTVDLLASQKLDRFFASRPQFARTPNNERQAQLVEGSIPLQNLTGLAVGGIVTSKGVQYMVLPGPPSELKLM
VMEQVVPILSNNGTKLYSRVLRFFGIGESQLVTILEDIIKNQTDPTIAPYAKVGEVTLRLSTKAENQDEADFKLDSLEKE
ILALKTLDNRKLKDLLYGYGDNNSMARTVLELLKVQNKTITAAESLTAGLFQSQLAEFSGASQVFNGGFTTYSMEAKSQL
LGIPKKKLQEYGVVSHFTAEAMAQQARQLLKADFGIGLTGVAGPDELEGYPAGTVFIGIATPEGVSSIKVSIGGKSRSDV
RHISTLHAFDLVRRTLLKI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=20317 DN94_09020 AHX75750.1 1764388..1765647(-) (cinA) [Streptococcus agalactiae strain 138spar]
GTGAGGGCTGAAATTATCGCTGTAGGAACAGAAATTTTAACAGGACAGATTGTTAATACAAACGCACAATTTTTGTCGGA
GAAAATGGCAGAATTGGGAATTGATATTTATTTCCAGACAGCTGTAGGAGACAATGAGGGACGTTTATTATCGCTTTTAG
ATATAGCTAGTCAGCGTAGTCAATTGGTTATCCTATGTGGTGGACTTGGACCTACAGAGGATGATTTAACGAAGCAAACT
TTGGCTAAATTTTTAGGTAAATCATTAACAGTGGATTTATTAGCTAGTCAAAAATTGGATCGTTTTTTTGCAAGTCGTCC
TCAGTTTGCTAGAACGCCAAATAATGAACGACAAGCTCAATTGGTTGAAGGATCAATACCTCTACAAAACCTTACTGGTC
TAGCTGTTGGTGGTATCGTTACATCTAAGGGAGTCCAATATATGGTTTTACCAGGTCCGCCTAGTGAATTAAAGCTAATG
GTTATGGAGCAGGTGGTACCTATTTTGTCAAATAATGGCACAAAATTATATTCACGTGTATTGAGATTCTTTGGTATCGG
TGAGAGTCAGTTAGTCACAATCTTAGAAGACATAATTAAGAATCAGACAGATCCAACTATAGCACCATATGCAAAGGTTG
GTGAGGTAACTTTAAGGTTATCAACGAAAGCTGAAAATCAGGATGAAGCCGACTTTAAATTAGATAGCTTAGAAAAAGAA
ATACTTGCTCTCAAGACATTAGATAACCGTAAATTAAAAGATTTATTATATGGTTATGGTGATAATAATAGTATGGCACG
TACTGTTTTAGAATTATTGAAAGTACAAAATAAAACGATTACTGCCGCAGAGAGCTTAACAGCAGGGTTATTTCAATCTC
AGTTAGCAGAATTTTCTGGTGCTTCGCAAGTTTTTAATGGTGGTTTTACGACCTATAGTATGGAAGCAAAATCACAACTT
CTCGGCATTCCTAAGAAAAAATTGCAAGAATACGGAGTTGTCAGTCATTTTACAGCTGAGGCAATGGCTCAGCAAGCTCG
CCAACTTTTAAAAGCAGATTTTGGTATCGGTTTAACGGGAGTTGCTGGTCCTGATGAGTTGGAAGGATACCCTGCAGGTA
CAGTTTTTATTGGGATTGCAACCCCTGAAGGCGTTTCTTCTATTAAAGTATCGATTGGAGGGAAGAGCCGCTCAGATGTC
CGTCATATCAGTACTTTACATGCTTTTGACTTGGTGCGTAGGACTTTATTAAAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.223

99.523

0.709
  cinA Streptococcus mitis NCTC 12261

70.983

99.523

0.706
  cinA Streptococcus pneumoniae TIGR4

69.784

99.523

0.695
  cinA Streptococcus pneumoniae Rx1

69.784

99.523

0.695
  cinA Streptococcus pneumoniae R6

69.784

99.523

0.695
  cinA Streptococcus pneumoniae D39

69.544

99.523

0.692
  cinA Streptococcus mutans UA159

68.106

99.523

0.678
  cinA Streptococcus suis isolate S10

55.288

99.284

0.549
  cinA Bacillus subtilis subsp. subtilis str. 168

43.301

99.761

0.432

Multiple sequence alignment