Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BS1321_RS03900 Genome accession   NZ_CP017704
Coordinates   858129..859175 (-) Length   348 a.a.
NCBI ID   WP_063231808.1    Uniprot ID   A0A223ED36
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 853129..864175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS03880 (BS1321_03800) - 853770..854705 (-) 936 WP_063231805.1 dipeptidase -
  BS1321_RS03885 (BS1321_03805) spoVS 854840..855100 (-) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  BS1321_RS03890 (BS1321_03810) - 855275..856072 (-) 798 WP_063231806.1 TIGR00282 family metallophosphoesterase -
  BS1321_RS03895 (BS1321_03815) rny 856224..857783 (-) 1560 WP_063231807.1 ribonuclease Y -
  BS1321_RS03900 (BS1321_03820) recA 858129..859175 (-) 1047 WP_063231808.1 recombinase RecA Machinery gene
  BS1321_RS03905 (BS1321_03825) cinA 859523..860755 (-) 1233 WP_063232123.1 competence/damage-inducible protein A Machinery gene
  BS1321_RS03910 (BS1321_03830) pgsA 860778..861362 (-) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BS1321_RS03915 (BS1321_03835) - 861527..862426 (-) 900 WP_063231809.1 helix-turn-helix domain-containing protein -
  BS1321_RS03920 (BS1321_03840) - 862444..863235 (-) 792 WP_063231810.1 DUF3388 domain-containing protein -
  BS1321_RS03925 (BS1321_03845) - 863478..863735 (-) 258 WP_063231811.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38031.11 Da        Isoelectric Point: 4.7928

>NTDB_id=202025 BS1321_RS03900 WP_063231808.1 858129..859175(-) (recA) [Peribacillus simplex NBRC 15720 = DSM 1321]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGADLDIVLKSGSWYSYNEERVGQGRENAKLFLKENQDIAKEISQK
IRDHYNLDGEHELPPEENEPEEHFELLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=202025 BS1321_RS03900 WP_063231808.1 858129..859175(-) (recA) [Peribacillus simplex NBRC 15720 = DSM 1321]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCCATTATGAAACT
TGGGGAACAGTCTGATCGTAGAATTTCAACGATTTCAAGCGGTTCTTTAGCATTGGACGTAGCATTGGGAGTGGGCGGAT
ATCCAAGAGGCCGGGTCATTGAGATATATGGACCTGAAAGCTCCGGTAAAACGACTGTTGCATTACATGCTATTGCAGAA
GTACAAAAGACTGGCGGCACGGCTGCATTCATTGATGCCGAACATGCCTTAGATCCAGCATATTCAGAAAAACTTGGTGT
GAATATCGATGAGTTACTGCTTTCACAGCCTGATACGGGTGAACAAGCCTTAGAGATCGCTGAAGCGTTAGTTCGAAGTG
GAGCGGTGGATATCATTGTCATTGACTCGGTGGCAGCACTTGTTCCTAAAGCTGAAATCGAAGGCGAAATGGGAGATTCC
CATATGGGTCTTCAAGCCCGGATGATGTCTCAGGCACTAAGAAAACTGTCTGGTGCCATTAATAAATCAAATACCATTGC
CATTTTCATTAACCAAGTCCGTGAAAAAATCGGTGTTATGTTTGGGAATCCTGAAACGACTCCGGGAGGCCGGGCATTGA
AGTTCTATTCAACTGTTCGTCTGGAAGTGCGCCGTGCGGAACAACTAAAACAAGGAAATGAAATTGTCGGTAATAAAACC
AAAATCAAAGTTGTAAAAAACAAGGTTGCTCCACCATTCCGTCAAGCGGAAGTTGACATTATGTATGGTCAAGGGATTTC
CCAGGAAGGTGAAATCATCGATATGGGTGCAGATCTTGATATCGTCCTTAAAAGCGGCTCGTGGTATTCATACAATGAAG
AGCGTGTCGGACAAGGCCGCGAAAATGCGAAGCTGTTCTTGAAAGAAAATCAGGATATCGCTAAGGAAATTTCTCAGAAA
ATCAGAGATCACTATAATCTCGATGGAGAGCATGAATTACCACCAGAAGAAAATGAACCAGAAGAGCATTTTGAATTGCT
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223ED36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

94.253

0.807
  recA Latilactobacillus sakei subsp. sakei 23K

72.861

97.414

0.71
  recA Streptococcus pneumoniae R6

67.463

96.264

0.649
  recA Streptococcus mitis NCTC 12261

67.463

96.264

0.649
  recA Streptococcus pneumoniae Rx1

67.463

96.264

0.649
  recA Streptococcus pneumoniae D39

67.463

96.264

0.649
  recA Streptococcus pneumoniae TIGR4

67.463

96.264

0.649
  recA Streptococcus mitis SK321

65.889

98.563

0.649
  recA Streptococcus mutans UA159

67.477

94.54

0.638
  recA Streptococcus pyogenes NZ131

67.278

93.966

0.632
  recA Lactococcus lactis subsp. cremoris KW2

64.881

96.552

0.626
  recA Ralstonia pseudosolanacearum GMI1000

68.69

89.943

0.618
  recA Vibrio cholerae strain A1552

66.667

92.241

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

92.241

0.615
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.241

0.609
  recA Acinetobacter baumannii D1279779

61.047

98.851

0.603
  recA Acinetobacter baylyi ADP1

60.405

99.425

0.601
  recA Helicobacter pylori strain NCTC11637

60.756

98.851

0.601
  recA Helicobacter pylori 26695

60.756

98.851

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.253

0.598
  recA Pseudomonas stutzeri DSM 10701

63.75

91.954

0.586
  recA Glaesserella parasuis strain SC1401

63.75

91.954

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.966

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.954

0.569

Multiple sequence alignment