Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BS1321_RS03905 Genome accession   NZ_CP017704
Coordinates   859523..860755 (-) Length   410 a.a.
NCBI ID   WP_063232123.1    Uniprot ID   A0A223EPM9
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 854523..865755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS03885 (BS1321_03805) spoVS 854840..855100 (-) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  BS1321_RS03890 (BS1321_03810) - 855275..856072 (-) 798 WP_063231806.1 TIGR00282 family metallophosphoesterase -
  BS1321_RS03895 (BS1321_03815) rny 856224..857783 (-) 1560 WP_063231807.1 ribonuclease Y -
  BS1321_RS03900 (BS1321_03820) recA 858129..859175 (-) 1047 WP_063231808.1 recombinase RecA Machinery gene
  BS1321_RS03905 (BS1321_03825) cinA 859523..860755 (-) 1233 WP_063232123.1 competence/damage-inducible protein A Machinery gene
  BS1321_RS03910 (BS1321_03830) pgsA 860778..861362 (-) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BS1321_RS03915 (BS1321_03835) - 861527..862426 (-) 900 WP_063231809.1 helix-turn-helix domain-containing protein -
  BS1321_RS03920 (BS1321_03840) - 862444..863235 (-) 792 WP_063231810.1 DUF3388 domain-containing protein -
  BS1321_RS03925 (BS1321_03845) - 863478..863735 (-) 258 WP_063231811.1 DUF3243 domain-containing protein -
  BS1321_RS03930 (BS1321_03850) ymfI 863815..864540 (-) 726 WP_063231812.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44948.19 Da        Isoelectric Point: 4.9671

>NTDB_id=202026 BS1321_RS03905 WP_063232123.1 859523..860755(-) (cinA) [Peribacillus simplex NBRC 15720 = DSM 1321]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDQGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNVLGVSDD
TISEHGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=202026 BS1321_RS03905 WP_063232123.1 859523..860755(-) (cinA) [Peribacillus simplex NBRC 15720 = DSM 1321]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCAAACTTGATTGTCTTTACCGGCGGACTTGGTCCTACCAAAGATGATTTAACAAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTAGCAAACGATCAGGGCATGG
CACCGGGAATGGTCTTGTCCAAATCTGGGATTACATATATGCTTCTGCCTGGCCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACTGCTAAAGACTCTTCTAAAGAAAAATGCGAGGAGCTTATTTTAGAAGCGGAA
AAAGAAATTCTCAGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GTGCCGGTAAAGTCTTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCGAATGTCCTCGGCGTCAGTGATGAT
ACGATATCTGAGCATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGCAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGGACAGTATTTATTGGCATTT
CCTATCGGGATGGGAACACTCATTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCACTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223EPM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.578

99.512

0.583
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.466
  cinA Streptococcus pneumoniae Rx1

45

100

0.461
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae R6

45

100

0.461
  cinA Streptococcus pneumoniae D39

44.762

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.564

98.537

0.429
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38

Multiple sequence alignment