Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GD3902_RS03060 Genome accession   NZ_CP017694
Coordinates   632675..633715 (-) Length   346 a.a.
NCBI ID   WP_008878509.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 627675..638715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS03040 (GD3902_02950) - 628290..629213 (-) 924 WP_029760497.1 dipeptidase -
  GD3902_RS03045 (GD3902_02955) spoVS 629307..629567 (-) 261 WP_008878506.1 stage V sporulation protein SpoVS -
  GD3902_RS03050 (GD3902_02960) - 629698..630492 (-) 795 WP_029760496.1 TIGR00282 family metallophosphoesterase -
  GD3902_RS03055 (GD3902_02965) rny 630602..632158 (-) 1557 WP_008878508.1 ribonuclease Y -
  GD3902_RS03060 (GD3902_02970) recA 632675..633715 (-) 1041 WP_008878509.1 recombinase RecA Machinery gene
  GD3902_RS03065 (GD3902_02975) cinA 633896..635140 (-) 1245 WP_029760494.1 competence/damage-inducible protein A Machinery gene
  GD3902_RS03070 (GD3902_02980) pgsA 635165..635743 (-) 579 WP_008878511.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GD3902_RS03075 (GD3902_02985) - 635824..636723 (-) 900 WP_029760493.1 helix-turn-helix domain-containing protein -
  GD3902_RS03080 (GD3902_02990) - 636748..637539 (-) 792 WP_008878513.1 DUF3388 domain-containing protein -
  GD3902_RS03085 (GD3902_02995) - 637668..637916 (-) 249 WP_008878514.1 DUF3243 domain-containing protein -
  GD3902_RS03090 (GD3902_03000) ymfI 637980..638696 (-) 717 WP_029760492.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37553.84 Da        Isoelectric Point: 5.2026

>NTDB_id=201866 GD3902_RS03060 WP_008878509.1 632675..633715(-) (recA) [Geobacillus thermodenitrificans strain KCTC3902]
MNQDRQAALEQALKQIERQFGKGAIMKLGEQAERQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIA
EVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAR
AIRKHYGIDAGEAGEPLQDEFGLLEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=201866 GD3902_RS03060 WP_008878509.1 632675..633715(-) (recA) [Geobacillus thermodenitrificans strain KCTC3902]
GTGAACCAAGATCGTCAAGCTGCATTAGAGCAGGCGTTAAAACAAATTGAACGACAGTTTGGCAAAGGGGCCATTATGAA
GCTCGGCGAACAGGCGGAGCGGCAAATCTCGACCGTTCCGAGCGGTTCGCTGGCGCTCGACATCGCATTAGGTGTCGGCG
GTTATCCGCGCGGGAGAATCATCGAAATTTATGGTCCGGAATCATCCGGGAAGACAACTGTTGCCCTTCACGCGATCGCT
GAAGTGCAAAAACAAGGAGGACAAGCAGCTTTCATCGATGCCGAGCATGCGCTTGATCCGATTTATGCACAAAAATTAGG
GGTCAACATCGATGAATTGTTGCTTTCCCAACCCGATACGGGCGAGCAGGCGCTCGAAATTGCCGAAGCGCTCGTACGAA
GCGGTGCGGTCGATATTATTGTCATCGACTCGGTGGCGGCGCTCGTACCGAAAGCAGAAATTGAAGGGGAGATGGGTGAC
GCCCACGTCGGCTTGCAAGCCCGCCTCATGTCGCAGGCGCTCCGTAAGCTGTCTGGCGCCATTAACAAATCGAAAACGAT
CGCCATCTTCATCAACCAGATCCGTGAAAAAGTCGGAGTCATGTTCGGCAATCCAGAAACGACGCCGGGTGGACGGGCTC
TTAAGTTTTACGCTTCCGTCCGTTTAGAGGTGCGCCGCGCTGAACAAATTAAACAAGGCAATGACATGGTTGGCAACAAA
ACGAAAATCAAAGTTGTCAAAAACAAAGTTGCTCCGCCGTTTAAAACGGCCGACGTCGACATTATGTACGGCGAAGGCAT
TTCCCGCGAAGGGGAAATCATCGATATGGCGGCCGAGCTTGACATTGTGCAAAAAAGCGGTTCATGGTATTCCTACAAAG
ATGAACGGCTCGGTCAAGGGCGTGAGAATGCGAAGCAGTTTCTGAAAGAAAACCCGCATATTGCTGAAGAGATCGCCCGC
GCCATCCGCAAACATTACGGCATCGATGCCGGCGAGGCGGGCGAACCGCTGCAAGACGAGTTCGGGCTGCTTGAGGAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.423

94.22

0.824
  recA Latilactobacillus sakei subsp. sakei 23K

76.923

93.931

0.723
  recA Streptococcus mitis SK321

69.883

98.844

0.691
  recA Streptococcus mitis NCTC 12261

69.883

98.844

0.691
  recA Streptococcus pneumoniae Rx1

70.571

96.243

0.679
  recA Streptococcus pneumoniae D39

70.571

96.243

0.679
  recA Streptococcus pneumoniae R6

70.571

96.243

0.679
  recA Streptococcus pneumoniae TIGR4

70.571

96.243

0.679
  recA Streptococcus pyogenes NZ131

70.122

94.798

0.665
  recA Streptococcus mutans UA159

69.605

95.087

0.662
  recA Lactococcus lactis subsp. cremoris KW2

68.085

95.087

0.647
  recA Neisseria gonorrhoeae MS11

63.05

98.555

0.621
  recA Neisseria gonorrhoeae MS11

63.05

98.555

0.621
  recA Neisseria gonorrhoeae strain FA1090

63.05

98.555

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.848

95.376

0.618
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.462

0.616
  recA Acinetobacter baumannii D1279779

62.059

98.266

0.61
  recA Helicobacter pylori strain NCTC11637

61.584

98.555

0.607
  recA Helicobacter pylori 26695

61.584

98.555

0.607
  recA Acinetobacter baylyi ADP1

60.345

100

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

94.798

0.604
  recA Vibrio cholerae strain A1552

64.506

93.642

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

93.642

0.604
  recA Pseudomonas stutzeri DSM 10701

63.777

93.353

0.595
  recA Glaesserella parasuis strain SC1401

63.354

93.064

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.776

91.618

0.575

Multiple sequence alignment