Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GD3902_RS03065 Genome accession   NZ_CP017694
Coordinates   633896..635140 (-) Length   414 a.a.
NCBI ID   WP_029760494.1    Uniprot ID   A0A0Q0UKQ7
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 628896..640140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS03045 (GD3902_02955) spoVS 629307..629567 (-) 261 WP_008878506.1 stage V sporulation protein SpoVS -
  GD3902_RS03050 (GD3902_02960) - 629698..630492 (-) 795 WP_029760496.1 TIGR00282 family metallophosphoesterase -
  GD3902_RS03055 (GD3902_02965) rny 630602..632158 (-) 1557 WP_008878508.1 ribonuclease Y -
  GD3902_RS03060 (GD3902_02970) recA 632675..633715 (-) 1041 WP_008878509.1 recombinase RecA Machinery gene
  GD3902_RS03065 (GD3902_02975) cinA 633896..635140 (-) 1245 WP_029760494.1 competence/damage-inducible protein A Machinery gene
  GD3902_RS03070 (GD3902_02980) pgsA 635165..635743 (-) 579 WP_008878511.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GD3902_RS03075 (GD3902_02985) - 635824..636723 (-) 900 WP_029760493.1 helix-turn-helix domain-containing protein -
  GD3902_RS03080 (GD3902_02990) - 636748..637539 (-) 792 WP_008878513.1 DUF3388 domain-containing protein -
  GD3902_RS03085 (GD3902_02995) - 637668..637916 (-) 249 WP_008878514.1 DUF3243 domain-containing protein -
  GD3902_RS03090 (GD3902_03000) ymfI 637980..638696 (-) 717 WP_029760492.1 elongation factor P 5-aminopentanone reductase -
  GD3902_RS03095 (GD3902_03005) yfmH 638754..640043 (-) 1290 WP_008878516.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44764.27 Da        Isoelectric Point: 5.7872

>NTDB_id=201867 GD3902_RS03065 WP_029760494.1 633896..635140(-) (cinA) [Geobacillus thermodenitrificans strain KCTC3902]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTVVGDNAARLEQAVNVAQTRADLIIFTGGLGPTKDDLTKET
IARLLGRRLVTDEEALRAIEAYFVRTNRPMTENNKKQALILEGSTVLKNEHGMAPGMALSVNGITYMLLPGPPKEMRPMF
TKYGTAFLRGAFSLAERIESRVLRFFGIGESALETAVADLIDAQSNPTIAPLAGDGEVTLRLTAKHRDQAEAKRLLDETE
AAILARVGRYCYGYNNETLFTKTIERLKERGWTIAAAESLTGGLFLEQLTAIPGASAVVQGGVVCYTNDVKERMLGVPRA
LLETDGAVSESCARLLAENVRTMCSADVGISFTGVAGPDPLEDHPPGTVYVGVAVRGRDTTVHRLTLSGTRDNIRVRTAK
YGCFFLLQMLAASD

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=201867 GD3902_RS03065 WP_029760494.1 633896..635140(-) (cinA) [Geobacillus thermodenitrificans strain KCTC3902]
TTGAATGCGGAAATCATTGCTGTTGGCTCCGAGCTGTTGCTCGGACAAATTGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTCGCTGAACTTGGGATTAACGTTTATTTCCATACAGTCGTCGGCGACAATGCAGCCCGTCTCGAACAAGCCGTCA
ATGTTGCCCAGACGAGGGCTGACTTGATCATTTTTACCGGTGGACTTGGACCGACAAAGGACGATTTGACGAAAGAGACG
ATCGCCCGTCTGCTCGGCCGCCGGCTTGTCACTGATGAGGAAGCACTACGGGCGATTGAAGCATATTTTGTCCGCACGAA
CCGGCCAATGACAGAAAACAACAAAAAGCAGGCGCTCATCTTGGAAGGATCGACAGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTTCGGTCAATGGCATTACATATATGCTGCTGCCTGGGCCGCCGAAAGAAATGCGTCCGATGTTT
ACAAAATACGGAACCGCCTTTTTGCGTGGGGCGTTTTCGCTTGCGGAGCGAATCGAATCGCGCGTGCTTCGTTTTTTTGG
CATCGGCGAATCGGCGCTTGAGACAGCGGTTGCTGATTTGATTGACGCCCAGTCCAATCCGACGATCGCCCCGCTGGCTG
GCGACGGCGAAGTGACGCTTCGTCTGACGGCAAAACATCGGGATCAGGCGGAGGCGAAGCGGCTGCTTGATGAAACGGAA
GCGGCCATTTTGGCGCGCGTCGGCCGCTATTGTTACGGATATAACAACGAAACGCTGTTTACGAAAACGATCGAACGGTT
AAAAGAAAGAGGGTGGACGATCGCTGCGGCTGAGAGCCTGACCGGCGGGCTGTTTCTCGAACAGCTGACAGCCATCCCGG
GCGCATCGGCAGTGGTGCAAGGCGGCGTCGTCTGCTACACAAACGACGTGAAAGAAAGGATGCTTGGCGTGCCGCGGGCG
CTGTTAGAGACGGACGGGGCGGTCAGCGAATCGTGCGCTCGCTTGCTTGCCGAAAACGTCCGGACGATGTGCAGCGCTGA
TGTTGGCATCAGCTTTACCGGCGTTGCTGGTCCTGATCCGCTTGAAGACCATCCACCCGGCACCGTTTATGTTGGCGTCG
CTGTCCGCGGGCGCGACACAACTGTCCACCGCCTCACTTTATCCGGCACGCGCGATAACATTCGTGTCCGCACCGCCAAA
TACGGTTGTTTCTTTTTGCTCCAGATGCTTGCGGCCAGCGATTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0UKQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.413

98.792

0.587
  cinA Streptococcus mitis SK321

48.113

100

0.493
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.493
  cinA Streptococcus pneumoniae D39

47.642

100

0.488
  cinA Streptococcus mitis NCTC 12261

47.406

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.889

97.826

0.478
  cinA Streptococcus pneumoniae R6

48.889

97.826

0.478
  cinA Streptococcus mutans UA159

47.368

96.377

0.457
  cinA Streptococcus suis isolate S10

43.386

91.304

0.396

Multiple sequence alignment