Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BKM66_RS00410 Genome accession   NZ_CP017666
Coordinates   71171..72322 (+) Length   383 a.a.
NCBI ID   WP_105184189.1    Uniprot ID   A0AAD0P9D8
Organism   Streptococcus suis strain 0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66171..77322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS00385 (BKM66_00380) mutL 66331..68268 (+) 1938 WP_014637283.1 DNA mismatch repair endonuclease MutL -
  BKM66_RS00390 (BKM66_00385) ruvA 68307..68897 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA -
  BKM66_RS00400 (BKM66_00395) - 69332..69901 (+) 570 WP_105184191.1 DNA-3-methyladenine glycosylase I -
  BKM66_RS00405 (BKM66_00400) cinA 69938..71119 (+) 1182 WP_105184190.1 competence/damage-inducible protein A Machinery gene
  BKM66_RS00410 (BKM66_00405) recA 71171..72322 (+) 1152 WP_105184189.1 recombinase RecA Machinery gene
  BKM66_RS00415 (BKM66_00410) spx 72558..72956 (+) 399 WP_105184188.1 transcriptional regulator Spx -
  BKM66_RS00420 (BKM66_00415) - 73056..73322 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  BKM66_RS00425 (BKM66_00420) ruvX 73322..73741 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  BKM66_RS00430 (BKM66_00425) - 73753..74073 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  BKM66_RS10485 - 74332..74454 (+) 123 WP_257571720.1 hypothetical protein -
  BKM66_RS00435 (BKM66_00430) rpsJ 74663..74971 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  BKM66_RS00440 (BKM66_00435) rplC 75108..75734 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  BKM66_RS00445 (BKM66_00440) rplD 75759..76382 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  BKM66_RS00450 (BKM66_00445) - 76382..76681 (+) 300 WP_004195491.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40975.73 Da        Isoelectric Point: 4.8910

>NTDB_id=201280 BKM66_RS00410 WP_105184189.1 71171..72322(+) (recA) [Streptococcus suis strain 0061]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADETQETVIEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=201280 BKM66_RS00410 WP_105184189.1 71171..72322(+) (recA) [Streptococcus suis strain 0061]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCAGGTGGCTATCCGAAGGGCCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAACACGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTC
GCTGCCCTTGTACCTCGTGCAGAGATTGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCA
GGCTATGCGCAAACTAGGTGCATCCATCAACAAAACTAAGACGGTAGCCATTTTCATTAACCAGTTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGGACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAAAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTGGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAAATCCGTGTTCATTACGGTTT
GATTGAAGCTGATGAAACGCAAGAAACTGTGATAGAAGAGGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

85.117

100

0.851
  recA Streptococcus mitis NCTC 12261

84.031

99.739

0.838
  recA Streptococcus pneumoniae D39

82.902

100

0.836
  recA Streptococcus pneumoniae Rx1

82.902

100

0.836
  recA Streptococcus pneumoniae R6

82.902

100

0.836
  recA Streptococcus pneumoniae TIGR4

82.902

100

0.836
  recA Streptococcus mitis SK321

83.246

99.739

0.83
  recA Lactococcus lactis subsp. cremoris KW2

74.788

92.167

0.689
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Acinetobacter baumannii D1279779

62.577

85.117

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

60.119

87.728

0.527
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Pseudomonas stutzeri DSM 10701

58.017

89.556

0.52
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499
  recA Helicobacter pylori 26695

57.879

86.162

0.499

Multiple sequence alignment