Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SSU05_0064 Genome accession   CP000407
Coordinates   67866..68831 (+) Length   321 a.a.
NCBI ID   ABP89036.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62866..73831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0060 - 64526..65116 (+) 591 ABP89032.1 Holliday junction resolvasome, DNA-binding subunit -
  SSU05_0061 - 65757..66410 (+) 654 ABP89033.1 3-methyladenine DNA glycosylase -
  SSU05_0062 cinA 66411..67628 (+) 1218 ABP89034.1 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA Machinery gene
  SSU05_0063 recA 67749..67841 (+) 93 ABP89035.1 recombination protein A Machinery gene
  SSU05_0064 recA 67866..68831 (+) 966 ABP89036.1 RecA/RadA recombinase Machinery gene
  SSU05_0065 - 69067..69465 (+) 399 ABP89037.1 Arsenate reductase and related protein, glutaredoxin family -
  SSU05_0066 - 69565..69831 (+) 267 ABP89038.1 Uncharacterized protein conserved in bacteria -
  SSU05_0067 - 69831..70250 (+) 420 ABP89039.1 Unknown protein -
  SSU05_0068 - 70262..70582 (+) 321 ABP89040.1 Uncharacterized protein conserved in bacteria -
  SSU05_0069 - 70754..71368 (+) 615 ABP89041.1 Uncharacterized protein conserved in bacteria -
  SSU05_0070 - 71809..72339 (+) 531 ABP89042.1 ribosomal protein S10 -
  SSU05_0071 - 72436..73062 (+) 627 ABP89043.1 Ribosomal protein L3 -
  SSU05_0072 - 73087..73710 (+) 624 ABP89044.1 Ribosomal protein L4 -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34294.04 Da        Isoelectric Point: 4.5705

>NTDB_id=20064 SSU05_0064 ABP89036.1 67866..68831(+) (recA) [Streptococcus suis 05ZYH33]
MRLEQVAILKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEI
AGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPET
TPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGII
QKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELE
D

Nucleotide


Download         Length: 966 bp        

>NTDB_id=20064 SSU05_0064 ABP89036.1 67866..68831(+) (recA) [Streptococcus suis 05ZYH33]
TTGCGCTTGGAGCAGGTGGCTATCCTAAAGGGCCGTATCATTGAGATTTACGGTCCAGAGAGCTCAGGTAAGACAACTGT
TGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTATCGATGCGGAGCATGCCTTGGATCCAG
CCTATGCGGCGGCTCTTGGTGTCAATATTGATGAGTTACTATTGTCACAGCCAGACTCAGGGGAACAAGGTCTTGAAATT
GCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTTGCAGCCCTTGTACCACGTGCAGAAAT
TGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGCTATGCGCAAACTCGGTGCATCCA
TCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCGGTGTCATGTTTGGTAACCCTGAAACA
ACGCCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGTGGAAACACACAAATCAAAGGAACAGG
TGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAACAAGGTGGCTCCACCATTTAAAGAAG
CTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTGAGATTGGTAGCAACCTCGGCATCATC
CAAAAAGCAGGGGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCTGAAAATGCTAAGAAATTCTTAGCAGA
TAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGCTTGATTGAAGCAGATGGAGTTGAAGAAG
TTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAGATCTTGATGGCGGTATTGAATTAGAA
GATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.304

97.508

0.832
  recA Streptococcus pneumoniae R6

83.175

98.131

0.816
  recA Streptococcus pneumoniae TIGR4

83.175

98.131

0.816
  recA Streptococcus pneumoniae Rx1

83.175

98.131

0.816
  recA Streptococcus pneumoniae D39

83.175

98.131

0.816
  recA Streptococcus pyogenes NZ131

83.974

97.196

0.816
  recA Streptococcus mitis NCTC 12261

84.244

96.885

0.816
  recA Streptococcus mitis SK321

83.28

96.885

0.807
  recA Lactococcus lactis subsp. cremoris KW2

76.344

86.916

0.664
  recA Bacillus subtilis subsp. subtilis str. 168

70.29

85.981

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

63.696

94.393

0.601
  recA Neisseria gonorrhoeae strain FA1090

64.13

85.981

0.551
  recA Neisseria gonorrhoeae MS11

64.13

85.981

0.551
  recA Neisseria gonorrhoeae MS11

64.13

85.981

0.551
  recA Acinetobacter baumannii D1279779

60.137

90.654

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.504

85.358

0.542
  recA Glaesserella parasuis strain SC1401

63.704

84.112

0.536
  recA Pseudomonas stutzeri DSM 10701

57.525

93.146

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.593

84.112

0.526
  recA Vibrio cholerae strain A1552

62.593

84.112

0.526
  recA Acinetobacter baylyi ADP1

62.362

84.424

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.011

86.293

0.526
  recA Ralstonia pseudosolanacearum GMI1000

61.232

85.981

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.397

84.735

0.52
  recA Helicobacter pylori strain NCTC11637

59.783

85.981

0.514
  recA Helicobacter pylori 26695

59.783

85.981

0.514

Multiple sequence alignment