Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SDD27957_06330 Genome accession   CM001076
Coordinates   1228080..1228559 (-) Length   159 a.a.
NCBI ID   EFY02904.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1223080..1233559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_06315 - 1223897..1225549 (+) 1653 EFY02901.1 fibrinogen-binding protein -
  SDD27957_06320 - 1225612..1226859 (-) 1248 EFY02902.1 TPR repeat-containing protein -
  SDD27957_06325 - 1226849..1228030 (-) 1182 EFY02903.1 hypothetical protein -
  SDD27957_06330 mutX 1228080..1228559 (-) 480 EFY02904.1 Putative 7,8-dihydro-8-oxoguanine-triphosphatase Machinery gene
  SDD27957_06335 - 1228755..1228946 (+) 192 EFY02905.1 hypothetical protein -
  SDD27957_06340 - 1229328..1229660 (-) 333 EFY02906.1 hypothetical protein -
  SDD27957_06345 - 1229951..1230994 (-) 1044 EFY02907.1 dTDP-glucose-4,6-dehydratase -
  SDD27957_06350 - 1231239..1231700 (-) 462 EFY02908.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  SDD27957_06355 - 1231666..1231833 (-) 168 EFY02909.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  SDD27957_06360 - 1231833..1232702 (-) 870 EFY02910.1 glucose-1-phosphate thymidylyltransferase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18478.68 Da        Isoelectric Point: 4.1894

>NTDB_id=20064 SDD27957_06330 EFY02904.1 1228080..1228559(-) (mutX) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTQLATICYIDNGESLLLLHRNKKENDVHEGKWISVGGKLEAGETPDECARREILEETHLTVTEMAFKGIITFPEFTPGH
DWYTYVFKVTGFEGELISDADSREGTLEWVPYEQVLEKPTWEGDYDIFKWILEDCPFFSAKFTYNETNQLIEKSVTFYD

Nucleotide


Download         Length: 480 bp        

>NTDB_id=20064 SDD27957_06330 EFY02904.1 1228080..1228559(-) (mutX) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACCCAATTGGCAACTATTTGTTATATTGATAATGGCGAGTCCTTGCTATTATTACACCGCAATAAAAAAGAAAATGA
TGTCCACGAAGGGAAGTGGATTTCAGTAGGAGGCAAGCTTGAAGCAGGGGAGACTCCAGATGAGTGTGCCCGTCGTGAGA
TTCTAGAGGAAACCCATTTGACCGTTACAGAGATGGCTTTTAAAGGAATCATTACTTTTCCAGAATTCACACCAGGTCAT
GATTGGTATACCTATGTTTTTAAAGTAACAGGATTTGAAGGGGAGCTTATTTCGGATGCTGACTCACGAGAGGGAACCTT
GGAATGGGTGCCTTACGAACAAGTATTGGAAAAACCGACATGGGAAGGGGATTATGACATTTTTAAATGGATTTTAGAGG
ATTGCCCCTTTTTTTCTGCCAAATTTACCTACAATGAAACTAACCAACTTATTGAGAAATCCGTCACCTTTTATGACTGA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

68.553

100

0.686

Multiple sequence alignment