Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SSU05_0062 Genome accession   CP000407
Coordinates   66411..67628 (+) Length   405 a.a.
NCBI ID   ABP89034.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 61411..72628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0059 - 62547..64487 (+) 1941 ABP89031.1 DNA mismatch repair enzyme (predicted ATPase) -
  SSU05_0060 - 64526..65116 (+) 591 ABP89032.1 Holliday junction resolvasome, DNA-binding subunit -
  SSU05_0061 - 65757..66410 (+) 654 ABP89033.1 3-methyladenine DNA glycosylase -
  SSU05_0062 cinA 66411..67628 (+) 1218 ABP89034.1 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA Machinery gene
  SSU05_0063 recA 67749..67841 (+) 93 ABP89035.1 recombination protein A Machinery gene
  SSU05_0064 recA 67866..68831 (+) 966 ABP89036.1 RecA/RadA recombinase Machinery gene
  SSU05_0065 - 69067..69465 (+) 399 ABP89037.1 Arsenate reductase and related protein, glutaredoxin family -
  SSU05_0066 - 69565..69831 (+) 267 ABP89038.1 Uncharacterized protein conserved in bacteria -
  SSU05_0067 - 69831..70250 (+) 420 ABP89039.1 Unknown protein -
  SSU05_0068 - 70262..70582 (+) 321 ABP89040.1 Uncharacterized protein conserved in bacteria -
  SSU05_0069 - 70754..71368 (+) 615 ABP89041.1 Uncharacterized protein conserved in bacteria -
  SSU05_0070 - 71809..72339 (+) 531 ABP89042.1 ribosomal protein S10 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44469.54 Da        Isoelectric Point: 4.5912

>NTDB_id=20062 SSU05_0062 ABP89034.1 66411..67628(+) (cinA) [Streptococcus suis 05ZYH33]
MSEQSHPRQRRNMKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNEGRLLSTLEVASKRSNMVVLCGG
LGPTEDDLTKQTLATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYI
VLPGPPSELKAMFSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADVIDKQTDPTLAPYAKVGEVTLRLSTKATSQE
EANLRLNQLEEDILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVVGQ
LGIESGWLSEEADCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATPSGISQKEIDLRGYSWQYLRQLACLQAWDF
VRNTL

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=20062 SSU05_0062 ABP89034.1 66411..67628(+) (cinA) [Streptococcus suis 05ZYH33]
ATGAGCGAGCAATCGCACCCTAGACAGAGGAGGAATATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGG
TCAAATCATTAATACCAATGCTCAGTTCCTTTCGGAGAAATGTGCAGAGCTGGGAATTGATGTTTATTTTCATACGGCAG
TTGGTGACAATGAAGGCCGTTTATTATCAACCCTTGAAGTAGCCAGCAAGCGGAGTAATATGGTCGTTCTTTGCGGTGGT
TTAGGACCAACTGAGGACGACCTGACCAAGCAGACCTTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGC
TATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCCAGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTG
TGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTTTAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATT
GTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATGTTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCA
ACTTTATTCGCGTGTCCTACGCTTTTTTGGAATTGGCGAAAGCCAGTTGGTGACTGTTTTGGCGGACGTGATTGATAAGC
AGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTGGAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAA
GAAGCAAATCTACGTTTAAATCAGTTGGAAGAAGACATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGG
AGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCGTTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGA
CAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTTTGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCGTCGGTCAG
CTAGGGATAGAATCGGGCTGGCTATCAGAGGAAGCTGACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGT
GTCTGTGCTTATCAAACCGGAATCAACAGAGGACAACGTACTTGCAAAAGTATACCTCACTTTGGCTACGCCCTCGGGTA
TTTCCCAAAAAGAGATAGATTTACGTGGTTATTCGTGGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTT
GTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(190-265)

Probable molybdopterin binding domain (MoCF_biosynth)

(17-182)

Competence-damaged protein (CinA)

(270-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

99.746

97.037

0.968
  cinA Streptococcus mutans UA159

55.231

100

0.56
  cinA Streptococcus pneumoniae R6

54.567

100

0.56
  cinA Streptococcus mitis SK321

54.567

100

0.56
  cinA Streptococcus pneumoniae TIGR4

54.567

100

0.56
  cinA Streptococcus pneumoniae Rx1

54.567

100

0.56
  cinA Streptococcus mitis NCTC 12261

54.327

100

0.558
  cinA Streptococcus pneumoniae D39

54.327

100

0.558
  cinA Bacillus subtilis subsp. subtilis str. 168

41.379

93.086

0.385

Multiple sequence alignment