Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SDD27957_10885 Genome accession   CM001076
Coordinates   2071928..2072947 (-) Length   339 a.a.
NCBI ID   EFY03758.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2066928..2077947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_10855 - 2068210..2069772 (-) 1563 EFY03752.1 hypothetical protein -
  SDD27957_10860 - 2069916..2070035 (-) 120 EFY03753.1 hypothetical protein -
  SDD27957_10865 - 2070118..2070423 (-) 306 EFY03754.1 hypothetical protein -
  SDD27957_10870 - 2070434..2070853 (-) 420 EFY03755.1 Holliday junction resolvase-like protein -
  SDD27957_10875 - 2070850..2071119 (-) 270 EFY03756.1 hypothetical protein -
  SDD27957_10880 spxA 2071231..2071629 (-) 399 EFY03757.1 transcriptional regulator Spx -
  SDD27957_10885 recA 2071928..2072947 (-) 1020 EFY03758.1 recombinase A Machinery gene
  SDD27957_10890 cinA 2073123..2074394 (-) 1272 EFY03759.1 competence damage-inducible protein A Machinery gene
  SDD27957_10895 - 2074518..2074856 (-) 339 EFY03760.1 hypothetical protein -
  SDD27957_10900 - 2075067..2075318 (-) 252 EFY03761.1 DNA-3-methyladenine glycosylase -
  SDD27957_10905 ruvA 2075457..2076050 (-) 594 EFY03762.1 Holliday junction DNA helicase RuvA -
  SDD27957_10910 - 2076052..2077272 (-) 1221 EFY03763.1 Putative integral membrane protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36302.24 Da        Isoelectric Point: 4.5638

>NTDB_id=20060 SDD27957_10885 EFY03758.1 2071928..2072947(-) (recA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAA
LGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTK
TIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEI
MYGEGISRTGELLKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMVMA
TEETDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=20060 SDD27957_10885 EFY03758.1 2071928..2072947(-) (recA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGCGCTTGGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGAGTTCAGGAAGCCTAGCTCTTGATATTGCGCTTGGAGC
GGGTGGTTATCCTAAAGGACGTATCATTGAGATCTATGGTCCAGAATCTTCCGGTAAAACAACTGTGGCTTTACATGCTG
TGGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGATGCCGAGCATGCGCTTGATCCAGCTTACGCTGCTGCG
CTTGGGGTTAATATTGATGAACTCCTTTTGTCTCAACCAGATTCTGGAGAACAAGGACTTGAAATTGCAGGTAAGTTGAT
TGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTAGCAGCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTG
GCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGCGATGCGTAAGCTATCGGCTTCTATTAACAAAACAAAA
ACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTGTGATGTTTGGAAATCCTGAAACAACACCGGGTGGTCG
TGCCTTGAAATTCTATGCTTCTGTTCGTTTAGATGTGCGTGGAACCACTCAAATTAAAGGAACTGGTGACCAAAAAGACA
GTAGTATTGGTAAAGAAACAAAAATCAAAGTTGTTAAAAACAAGGTAGCTCCTCCGTTTAAAGTGGCAGAGGTTGAAATC
ATGTATGGAGAAGGCATTTCCCGTACTGGAGAGCTTTTGAAAATTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGC
TTGGTTCTCTTATAATGGCGAGAAAATTGGTCAAGGTTCTGAAAATGCTAAGCGTTATTTGGCGGATCATCCAGAATTAT
TTGACGAGATTGATCGTAAAGTACGTGTTAAATTTGGTTTGCTTGAAGAAAGCGAAGAAGAATCTGCTATGGTAATGGCG
ACAGAAGAAACCGATGATCTTGTTTTAGATTTAGATAACGGGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(1-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

97.935

100

0.979
  recA Streptococcus mutans UA159

87.5

100

0.888
  recA Streptococcus mitis NCTC 12261

86.919

100

0.882
  recA Streptococcus mitis SK321

86.628

100

0.879
  recA Streptococcus pneumoniae R6

85.838

100

0.876
  recA Streptococcus pneumoniae Rx1

85.838

100

0.876
  recA Streptococcus pneumoniae D39

85.838

100

0.876
  recA Streptococcus pneumoniae TIGR4

85.838

100

0.876
  recA Lactococcus lactis subsp. cremoris KW2

80.831

92.33

0.746
  recA Latilactobacillus sakei subsp. sakei 23K

70.382

92.625

0.652
  recA Bacillus subtilis subsp. subtilis str. 168

68.404

90.56

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.725

91.15

0.59
  recA Acinetobacter baumannii D1279779

59.394

97.345

0.578
  recA Acinetobacter baylyi ADP1

59.756

96.755

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.123

88.791

0.56
  recA Neisseria gonorrhoeae strain FA1090

62.5

89.676

0.56
  recA Neisseria gonorrhoeae MS11

62.5

89.676

0.56
  recA Neisseria gonorrhoeae MS11

62.5

89.676

0.56
  recA Glaesserella parasuis strain SC1401

61.921

89.086

0.552
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.921

89.086

0.552
  recA Vibrio cholerae strain A1552

61.921

89.086

0.552
  recA Ralstonia pseudosolanacearum GMI1000

57.764

94.985

0.549
  recA Pseudomonas stutzeri DSM 10701

56.923

95.87

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.416

90.855

0.54
  recA Helicobacter pylori strain NCTC11637

58.842

91.74

0.54
  recA Helicobacter pylori 26695

58.842

91.74

0.54

Multiple sequence alignment