Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FAM18149p_RS02780 | Genome accession | NZ_CP017261 |
| Coordinates | 512427..513488 (+) | Length | 353 a.a. |
| NCBI ID | WP_016386176.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain FAM18149 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 495541..537236 | 512427..513488 | within | 0 |
Gene organization within MGE regions
Location: 495541..537236
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FAM18149p_RS02690 (FAM18149p_02540) | - | 495541..496539 (-) | 999 | WP_016377049.1 | IS30 family transposase | - |
| FAM18149p_RS02700 (FAM18149p_02545) | - | 496745..497785 (-) | 1041 | WP_096836061.1 | lactonase family protein | - |
| FAM18149p_RS02705 (FAM18149p_02550) | - | 498057..498434 (+) | 378 | WP_003564152.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| FAM18149p_RS02710 (FAM18149p_02555) | rpsN | 498546..498815 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| FAM18149p_RS02715 (FAM18149p_02560) | - | 498943..499920 (-) | 978 | WP_032674946.1 | GMP reductase | - |
| FAM18149p_RS02720 (FAM18149p_02565) | - | 500160..501107 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| FAM18149p_RS02725 (FAM18149p_02570) | - | 501173..502015 (+) | 843 | WP_096836063.1 | methyltransferase domain-containing protein | - |
| FAM18149p_RS02735 (FAM18149p_02575) | trmL | 502270..502779 (+) | 510 | WP_003601708.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| FAM18149p_RS02740 (FAM18149p_02580) | - | 502906..503316 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| FAM18149p_RS02745 (FAM18149p_02585) | - | 503489..505810 (+) | 2322 | WP_003601713.1 | FtsK/SpoIIIE family DNA translocase | - |
| FAM18149p_RS02750 (FAM18149p_02590) | yfmF | 505819..507081 (+) | 1263 | WP_003601715.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| FAM18149p_RS02755 (FAM18149p_02595) | yfmH | 507078..508370 (+) | 1293 | WP_003601717.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| FAM18149p_RS02760 (FAM18149p_02600) | ymfI | 508370..509098 (+) | 729 | WP_003601719.1 | elongation factor P 5-aminopentanone reductase | - |
| FAM18149p_RS02765 (FAM18149p_02605) | - | 509185..510123 (+) | 939 | WP_003601721.1 | helix-turn-helix domain-containing protein | - |
| FAM18149p_RS02770 (FAM18149p_02610) | pgsA | 510120..510713 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| FAM18149p_RS02775 (FAM18149p_02615) | cinA | 511129..512370 (+) | 1242 | WP_016386175.1 | competence/damage-inducible protein A | Machinery gene |
| FAM18149p_RS02780 (FAM18149p_02620) | recA | 512427..513488 (+) | 1062 | WP_016386176.1 | recombinase RecA | Machinery gene |
| FAM18149p_RS02785 | - | 513725..515002 (+) | 1278 | WP_016386172.1 | ISL3 family transposase | - |
| FAM18149p_RS02790 (FAM18149p_02630) | rny | 515285..516856 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| FAM18149p_RS02795 (FAM18149p_02635) | - | 516950..517600 (-) | 651 | WP_003601729.1 | YigZ family protein | - |
| FAM18149p_RS02800 (FAM18149p_02640) | - | 517628..518890 (+) | 1263 | WP_003601731.1 | helicase-related protein | - |
| FAM18149p_RS02805 (FAM18149p_02645) | - | 519103..519564 (+) | 462 | WP_016378308.1 | ComF family protein | - |
| FAM18149p_RS02810 (FAM18149p_02650) | hpf | 519688..520245 (+) | 558 | WP_003601735.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| FAM18149p_RS02820 (FAM18149p_02655) | secA | 520579..522942 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
| FAM18149p_RS02825 (FAM18149p_02660) | prfB | 523067..524183 (+) | 1117 | WP_096836065.1 | peptide chain release factor 2 | - |
| FAM18149p_RS02830 (FAM18149p_02665) | ftsE | 524260..524946 (+) | 687 | WP_096836067.1 | cell division ATP-binding protein FtsE | - |
| FAM18149p_RS02835 (FAM18149p_02670) | ftsX | 524936..525823 (+) | 888 | WP_003564193.1 | permease-like cell division protein FtsX | - |
| FAM18149p_RS02840 (FAM18149p_02675) | - | 525984..527087 (+) | 1104 | WP_016386165.1 | PDZ domain-containing protein | - |
| FAM18149p_RS02845 (FAM18149p_02680) | - | 527084..527791 (+) | 708 | WP_003564199.1 | response regulator transcription factor | - |
| FAM18149p_RS02850 (FAM18149p_02685) | pnpS | 527784..529451 (+) | 1668 | WP_003601738.1 | two-component system histidine kinase PnpS | - |
| FAM18149p_RS02855 (FAM18149p_02690) | - | 529554..530414 (+) | 861 | WP_003601739.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| FAM18149p_RS02860 (FAM18149p_02695) | pstC | 530555..531478 (+) | 924 | WP_003564205.1 | phosphate ABC transporter permease subunit PstC | - |
| FAM18149p_RS02865 (FAM18149p_02700) | pstA | 531475..532359 (+) | 885 | WP_003564208.1 | phosphate ABC transporter permease PstA | - |
| FAM18149p_RS02870 (FAM18149p_02705) | pstB | 532439..533257 (+) | 819 | WP_003564210.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| FAM18149p_RS02875 (FAM18149p_02710) | pstB | 533267..534031 (+) | 765 | WP_003564212.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| FAM18149p_RS02880 (FAM18149p_02715) | phoU | 534042..534719 (+) | 678 | WP_003569545.1 | phosphate signaling complex protein PhoU | - |
| FAM18149p_RS02885 (FAM18149p_02720) | liaX | 535139..536620 (+) | 1482 | WP_003564216.1 | daptomycin-sensing surface protein LiaX | - |
| FAM18149p_RS02890 (FAM18149p_02725) | - | 536632..536901 (+) | 270 | WP_003601740.1 | hypothetical protein | - |
| FAM18149p_RS02895 (FAM18149p_02730) | - | 536901..537236 (+) | 336 | WP_003564220.1 | phage holin family protein | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37791.97 Da Isoelectric Point: 5.8234
>NTDB_id=197056 FAM18149p_RS02780 WP_016386176.1 512427..513488(+) (recA) [Lacticaseibacillus paracasei strain FAM18149]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKSGSWYTYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKSGSWYTYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=197056 FAM18149p_RS02780 WP_016386176.1 512427..513488(+) (recA) [Lacticaseibacillus paracasei strain FAM18149]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCAGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAATCAGGTTCATGGTACACGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCAGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAATCAGGTTCATGGTACACGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.