Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   A7J08_RS00410 Genome accession   NZ_CP017088
Coordinates   73135..74286 (+) Length   383 a.a.
NCBI ID   WP_011922545.1    Uniprot ID   A0A075SNG0
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 68135..79286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS00390 (A7J08_00395) mutL 68719..70656 (+) 1938 WP_053866700.1 DNA mismatch repair endonuclease MutL -
  A7J08_RS00395 (A7J08_00400) ruvA 70695..71285 (+) 591 WP_053866701.1 Holliday junction branch migration protein RuvA -
  A7J08_RS00400 (A7J08_00405) - 71296..71865 (+) 570 WP_053866702.1 DNA-3-methyladenine glycosylase I -
  A7J08_RS00405 (A7J08_00410) cinA 71902..73083 (+) 1182 WP_148115621.1 competence/damage-inducible protein A Machinery gene
  A7J08_RS00410 (A7J08_00415) recA 73135..74286 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  A7J08_RS00415 (A7J08_00420) spx 74522..74920 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  A7J08_RS00420 (A7J08_00425) - 75020..75286 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  A7J08_RS00425 (A7J08_00430) ruvX 75286..75705 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  A7J08_RS00430 (A7J08_00435) - 75717..76037 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  A7J08_RS00435 (A7J08_00440) rpsJ 76471..76779 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  A7J08_RS00440 (A7J08_00445) rplC 76851..77477 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  A7J08_RS00445 (A7J08_00450) rplD 77502..78125 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  A7J08_RS00450 (A7J08_00455) - 78125..78424 (+) 300 WP_004195491.1 50S ribosomal protein L23 -
  A7J08_RS00455 (A7J08_00460) rplB 78442..79275 (+) 834 WP_002936663.1 50S ribosomal protein L2 -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 40860.59 Da        Isoelectric Point: 4.8910

>NTDB_id=195374 A7J08_RS00410 WP_011922545.1 73135..74286(+) (recA) [Streptococcus suis strain SRD478]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=195374 A7J08_RS00410 WP_011922545.1 73135..74286(+) (recA) [Streptococcus suis strain SRD478]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAGGGGCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCACAGCCAG
ACTCAGGAGAGCAGGGTCTTGAAATCGCTGGTAAGTTGATTGACTCTGGTGCTGTTGATTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGACGGTGATATTGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGCAAACTCGGTGCATCCATCAACAAAACAAAAACAGTAGCCATTTTCATTAACCAGTTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAAAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCGGCAATCTTTGATGAAATTGACCGCAAGATTCGTGTTCATTATGGTTT
AATTGAAGCAGATGGAGTTGAAGAGGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAGATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A075SNG0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862

  recA Streptococcus pyogenes NZ131

84.856

100

0.849

  recA Streptococcus pneumoniae R6

83.161

100

0.838

  recA Streptococcus pneumoniae Rx1

83.161

100

0.838

  recA Streptococcus pneumoniae D39

83.161

100

0.838

  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838

  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836

  recA Streptococcus mitis SK321

82.984

99.739

0.828

  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687

  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593

  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585

  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543

  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538

  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538

  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538

  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527

  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522

  recA Vibrio cholerae strain A1552

61.538

84.856

0.522

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522

  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507

  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501

  recA Helicobacter pylori 26695

57.879

86.162

0.499

  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499


Multiple sequence alignment