Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABE28_RS08330 Genome accession   NZ_CP017080
Coordinates   1727684..1728727 (+) Length   347 a.a.
NCBI ID   WP_064461922.1    Uniprot ID   A0A1B3XMB6
Organism   Peribacillus muralis strain G25-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1722684..1733727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS08305 (ABE28_008305) - 1722888..1723145 (+) 258 WP_064461917.1 DUF3243 domain-containing protein -
  ABE28_RS08310 (ABE28_008310) - 1723382..1724173 (+) 792 WP_064461918.1 DUF3388 domain-containing protein -
  ABE28_RS08315 (ABE28_008315) - 1724182..1725099 (+) 918 WP_306807333.1 RodZ family helix-turn-helix domain-containing protein -
  ABE28_RS08320 (ABE28_008320) pgsA 1725288..1725872 (+) 585 WP_064461920.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABE28_RS08325 (ABE28_008325) cinA 1725896..1727128 (+) 1233 WP_064461921.1 competence/damage-inducible protein A Machinery gene
  ABE28_RS08330 (ABE28_008330) recA 1727684..1728727 (+) 1044 WP_064461922.1 recombinase RecA Machinery gene
  ABE28_RS08335 (ABE28_008335) rny 1729082..1730641 (+) 1560 WP_061144685.1 ribonuclease Y -
  ABE28_RS08340 (ABE28_008340) - 1730792..1731589 (+) 798 WP_064461923.1 TIGR00282 family metallophosphoesterase -
  ABE28_RS08345 (ABE28_008345) spoVS 1731774..1732034 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  ABE28_RS08350 (ABE28_008350) - 1732130..1733092 (+) 963 WP_064461924.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37907.03 Da        Isoelectric Point: 4.7857

>NTDB_id=195274 ABE28_RS08330 WP_064461922.1 1727684..1728727(+) (recA) [Peribacillus muralis strain G25-68]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGAELDIVLKSGSWYSYNEERVGQGRENAKMFLKENQDIALEISQK
IRDHYNLDGEHELPPEEAEEEHFELLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=195274 ABE28_RS08330 WP_064461922.1 1727684..1728727(+) (recA) [Peribacillus muralis strain G25-68]
GTGAGTGATCGTCAAGCGGCTTTAGACATGGCTTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCCATCATGAAACT
TGGAGAACAGTCAGATCGTAGGATTTCAACGATTTCAAGTGGTTCATTGGCATTGGATGTAGCATTGGGAGTTGGCGGGT
ATCCAAGGGGACGGGTCATTGAGATATATGGACCTGAAAGCTCAGGTAAAACGACCGTTGCATTGCATGCCATTGCAGAA
GTGCAAAAAACTGGCGGTACTGCAGCATTCATTGACGCCGAGCATGCTTTAGATCCTGCATATTCTCAAAAACTAGGTGT
GAATATTGATGAATTGCTTCTTTCACAGCCCGATACAGGTGAACAAGCCTTGGAAATCGCTGAAGCGCTAGTTCGCAGTG
GAGCGGTTGACATCATTGTCATTGACTCGGTTGCAGCTCTTGTTCCTAAAGCTGAAATCGAAGGAGAAATGGGAGATTCC
CATATGGGTCTGCAAGCCCGGATGATGTCCCAGGCTCTAAGGAAGCTATCTGGTGCCATTAATAAATCAAATACCATCGC
CATTTTCATTAACCAAGTTCGTGAAAAAATCGGTGTAATGTTCGGGAATCCGGAAACGACTCCAGGAGGCCGGGCATTGA
AGTTCTATTCGACTGTGCGTCTGGAAGTGCGTCGTGCGGAACAATTAAAACAAGGCAATGAAATCGTCGGTAATAAAACT
AAAATCAAAGTCGTGAAAAACAAGGTTGCACCGCCATTCCGTCAAGCGGAAGTTGATATTATGTATGGTCAAGGTATTTC
GCAGGAAGGTGAAATCATTGATATGGGTGCAGAACTGGATATCGTCCTGAAAAGTGGTTCTTGGTATTCATACAATGAAG
AACGTGTTGGACAAGGACGGGAAAACGCGAAGATGTTCTTGAAAGAAAATCAAGATATCGCTCTGGAGATTTCTCAGAAA
ATCAGGGATCATTATAATCTTGATGGAGAGCATGAGCTACCACCAGAGGAAGCGGAAGAGGAACATTTTGAATTGCTTGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3XMB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.585

94.524

0.818
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

97.983

0.715
  recA Streptococcus pneumoniae R6

67.164

96.542

0.648
  recA Streptococcus pneumoniae TIGR4

67.164

96.542

0.648
  recA Streptococcus mitis NCTC 12261

67.164

96.542

0.648
  recA Streptococcus pneumoniae Rx1

67.164

96.542

0.648
  recA Streptococcus pneumoniae D39

67.164

96.542

0.648
  recA Streptococcus mitis SK321

66.866

96.542

0.646
  recA Streptococcus mutans UA159

67.173

94.813

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.179

96.83

0.631
  recA Streptococcus pyogenes NZ131

66.972

94.236

0.631
  recA Ralstonia pseudosolanacearum GMI1000

69.01

90.202

0.622
  recA Vibrio cholerae strain A1552

66.355

92.507

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.507

0.614
  recA Neisseria gonorrhoeae MS11

66.044

92.507

0.611
  recA Neisseria gonorrhoeae MS11

66.044

92.507

0.611
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.507

0.611
  recA Acinetobacter baumannii D1279779

61.449

99.424

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.524

0.599
  recA Helicobacter pylori strain NCTC11637

61.176

97.983

0.599
  recA Helicobacter pylori 26695

61.176

97.983

0.599
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Glaesserella parasuis strain SC1401

63.75

92.219

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

94.236

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.084

0.576

Multiple sequence alignment