Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABE28_RS08325 Genome accession   NZ_CP017080
Coordinates   1725896..1727128 (+) Length   410 a.a.
NCBI ID   WP_064461921.1    Uniprot ID   A0A1B3XMC3
Organism   Peribacillus muralis strain G25-68     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1720896..1732128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS08300 (ABE28_008300) ymfI 1722083..1722808 (+) 726 WP_064461916.1 elongation factor P 5-aminopentanone reductase -
  ABE28_RS08305 (ABE28_008305) - 1722888..1723145 (+) 258 WP_064461917.1 DUF3243 domain-containing protein -
  ABE28_RS08310 (ABE28_008310) - 1723382..1724173 (+) 792 WP_064461918.1 DUF3388 domain-containing protein -
  ABE28_RS08315 (ABE28_008315) - 1724182..1725099 (+) 918 WP_306807333.1 RodZ family helix-turn-helix domain-containing protein -
  ABE28_RS08320 (ABE28_008320) pgsA 1725288..1725872 (+) 585 WP_064461920.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABE28_RS08325 (ABE28_008325) cinA 1725896..1727128 (+) 1233 WP_064461921.1 competence/damage-inducible protein A Machinery gene
  ABE28_RS08330 (ABE28_008330) recA 1727684..1728727 (+) 1044 WP_064461922.1 recombinase RecA Machinery gene
  ABE28_RS08335 (ABE28_008335) rny 1729082..1730641 (+) 1560 WP_061144685.1 ribonuclease Y -
  ABE28_RS08340 (ABE28_008340) - 1730792..1731589 (+) 798 WP_064461923.1 TIGR00282 family metallophosphoesterase -
  ABE28_RS08345 (ABE28_008345) spoVS 1731774..1732034 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44905.08 Da        Isoelectric Point: 5.0210

>NTDB_id=195273 ABE28_RS08325 WP_064461921.1 1725896..1727128(+) (cinA) [Peribacillus muralis strain G25-68]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAQMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRDRAMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
ISYGYESIMNKLDKHERIESKVLRFFGIGEAELETVIDDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKQKCEELILTAE
KEIMDRVGKFYYGNDNTSLIKELVKELTVRKLSIAVAESLTGGMFQEQLTTIPGAGKVFKGGIVSYTNDAKSNVLGVSGG
IISEHGVVSGECAKEMASNVRGMHDADVGISFTGVAGPDEQEDKPVGTIFIGISYRDGNTHFKELNLSGSREQNRIRSVK
YGCHYLLNDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=195273 ABE28_RS08325 WP_064461921.1 1725896..1727128(+) (cinA) [Peribacillus muralis strain G25-68]
ATGGATGCAGAAATCATTGCAGTAGGCTCCGAGCTTCTTTTAGGACAAATCAATAACACTAATGGGAGATTCTTATCACA
GCAGTTTGCCCAAATGGGAATCAATGTGTTTTACCATACTGTGGTTGGGGATAACGACCGTCGTTTGCAGCAAGCTATAG
AGATTGCGGAATCAAGGGCGAACCTGATTGTCTTTACTGGTGGACTGGGTCCTACCAAGGATGATTTGACGAAGGAAACG
ATTGCTCGCCATATTGGCAAAAAGCTTGTATTTAACGATGAAGCTCTGCAATCCATCGAAGCTTACTTTCAAAAACGGGA
TCGGGCGATGACGGAAAATAACAAAAAGCAGGCCCTTGTTTTAGAAGGCAGTGAAGTGCTGGCAAACGATCATGGCATGG
CACCGGGAATGGTTCTGTCCAAATCCGGGATTACATATATGCTTCTGCCCGGCCCGCCTAGTGAAATGGAGCCGATGTTT
ATAAGTTATGGCTATGAATCGATCATGAATAAACTGGATAAGCATGAACGGATCGAATCCAAAGTACTCCGATTCTTTGG
TATTGGTGAAGCGGAATTGGAAACGGTGATAGATGATCTTCTGGTCAATCAAACGAACCCGACGATTGCCCCTCTTGCGG
CCGAAGGAGAAGTGACGTTAAGGATCACTGCGAAGGACTCGTCCAAACAAAAATGCGAAGAGCTAATTTTAACCGCTGAA
AAAGAAATTATGGACCGGGTCGGCAAGTTTTACTATGGAAATGATAATACTTCACTTATAAAGGAACTTGTAAAAGAATT
GACGGTCCGCAAGCTTTCGATTGCTGTTGCGGAAAGCCTGACCGGCGGGATGTTTCAGGAACAGCTGACAACCATCCCGG
GTGCCGGTAAGGTCTTTAAAGGCGGCATCGTCAGTTATACGAATGATGCGAAGTCGAATGTTCTCGGCGTGAGCGGCGGA
ATCATTTCCGAGCACGGTGTGGTGAGTGGTGAGTGTGCAAAGGAAATGGCTTCCAATGTCAGGGGAATGCACGATGCCGA
CGTAGGCATAAGCTTCACGGGTGTTGCAGGTCCGGATGAACAAGAAGATAAGCCTGTAGGCACTATATTCATTGGCATCT
CGTATCGCGATGGAAACACGCACTTTAAAGAACTGAATCTATCAGGCAGCAGGGAGCAGAACCGCATTAGAAGTGTGAAA
TACGGCTGTCATTACTTGCTGAATGATTTGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3XMC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.618

99.512

0.563
  cinA Streptococcus pneumoniae TIGR4

44.608

99.512

0.444
  cinA Streptococcus pneumoniae Rx1

44.118

99.512

0.439
  cinA Streptococcus pneumoniae R6

44.118

99.512

0.439
  cinA Streptococcus mitis SK321

43.873

99.512

0.437
  cinA Streptococcus pneumoniae D39

43.873

99.512

0.437
  cinA Streptococcus mitis NCTC 12261

43.873

99.512

0.437
  cinA Streptococcus mutans UA159

43.069

98.537

0.424
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378

Multiple sequence alignment