Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BGI23_RS18075 Genome accession   NZ_CP017016
Coordinates   3503041..3504072 (-) Length   343 a.a.
NCBI ID   WP_001283859.1    Uniprot ID   -
Organism   Bacillus sp. ABP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3498041..3509072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS18055 (BGI23_18055) - 3498643..3499566 (-) 924 WP_042875433.1 dipeptidase -
  BGI23_RS18060 (BGI23_18060) spoVS 3499625..3499885 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BGI23_RS18065 (BGI23_18065) - 3500034..3500828 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  BGI23_RS18070 (BGI23_18070) rny 3500993..3502555 (-) 1563 WP_000099774.1 ribonuclease Y -
  BGI23_RS18075 (BGI23_18075) recA 3503041..3504072 (-) 1032 WP_001283859.1 recombinase RecA Machinery gene
  BGI23_RS18080 (BGI23_18080) cinA 3504217..3505455 (-) 1239 WP_070806751.1 competence/damage-inducible protein CinA Machinery gene
  BGI23_RS18085 (BGI23_18085) pgsA 3505476..3506054 (-) 579 WP_070806752.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BGI23_RS18090 (BGI23_18090) - 3506118..3507044 (-) 927 WP_000137486.1 helix-turn-helix domain-containing protein -
  BGI23_RS18095 (BGI23_18095) - 3507066..3507851 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BGI23_RS18100 (BGI23_18100) - 3507991..3508239 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  BGI23_RS18105 (BGI23_18105) ymfI 3508315..3509028 (-) 714 WP_000759611.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37355.38 Da        Isoelectric Point: 4.9093

>NTDB_id=194493 BGI23_RS18075 WP_001283859.1 3503041..3504072(-) (recA) [Bacillus sp. ABP14]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEDMEDPSLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=194493 BGI23_RS18075 WP_001283859.1 3503041..3504072(-) (recA) [Bacillus sp. ABP14]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCATTAGGGGTAGGCGGAT
ACCCACGCGGCCGTATTATCGAGATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAA
GTACAGCGTCAAGGTGGACAAGCAGCATTCATCGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTAA
AATTCTATTCAACTGTTCGTCTTGAAGTACGTCGTGCCGAGCAATTAAAACAAGGTAACGACATTGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCAGGTGCTGAAGATATGGAGGATCCAAGTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mutans UA159

67.953

98.251

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

98.251

0.621
  recA Acinetobacter baumannii D1279779

62.099

100

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566

Multiple sequence alignment