Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BGI23_RS18080 Genome accession   NZ_CP017016
Coordinates   3504217..3505455 (-) Length   412 a.a.
NCBI ID   WP_070806751.1    Uniprot ID   -
Organism   Bacillus sp. ABP14     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3499217..3510455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS18060 (BGI23_18060) spoVS 3499625..3499885 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BGI23_RS18065 (BGI23_18065) - 3500034..3500828 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  BGI23_RS18070 (BGI23_18070) rny 3500993..3502555 (-) 1563 WP_000099774.1 ribonuclease Y -
  BGI23_RS18075 (BGI23_18075) recA 3503041..3504072 (-) 1032 WP_001283859.1 recombinase RecA Machinery gene
  BGI23_RS18080 (BGI23_18080) cinA 3504217..3505455 (-) 1239 WP_070806751.1 competence/damage-inducible protein CinA Machinery gene
  BGI23_RS18085 (BGI23_18085) pgsA 3505476..3506054 (-) 579 WP_070806752.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BGI23_RS18090 (BGI23_18090) - 3506118..3507044 (-) 927 WP_000137486.1 helix-turn-helix domain-containing protein -
  BGI23_RS18095 (BGI23_18095) - 3507066..3507851 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BGI23_RS18100 (BGI23_18100) - 3507991..3508239 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  BGI23_RS18105 (BGI23_18105) ymfI 3508315..3509028 (-) 714 WP_000759611.1 elongation factor P 5-aminopentanone reductase -
  BGI23_RS18110 (BGI23_18110) yfmH 3509132..3510418 (-) 1287 WP_070806753.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45489.68 Da        Isoelectric Point: 5.2169

>NTDB_id=194494 BGI23_RS18080 WP_070806751.1 3504217..3505455(-) (cinA) [Bacillus sp. ABP14]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLEEELVYDENALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQSNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHVEE
LILERVGEFFYGYDQEFLHYKAIELSKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=194494 BGI23_RS18080 WP_070806751.1 3504217..3505455(-) (cinA) [Bacillus sp. ABP14]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGAGGAAGAGCTTGTATATGACGAAAACGCATTAGCATTAATAAGCAATTATTTTAAACGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGGGCAACTGTGTTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAACTTTACAACGGGAGAAAACATCTATTCTCGCGTGCTTCGATTCTTCGGAAT
TGGGGAATCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAATCGAACCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACGGCTAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAA
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATCGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381

Multiple sequence alignment