Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BFM96_RS03500 Genome accession   NZ_CP016953
Coordinates   717230..718429 (+) Length   399 a.a.
NCBI ID   WP_068990372.1    Uniprot ID   A0A917EDP3
Organism   Streptococcus himalayensis strain HTS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712230..723429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS03475 - 712950..714170 (+) 1221 WP_068994141.1 MFS transporter -
  BFM96_RS03480 ruvA 714176..714766 (+) 591 WP_068990361.1 Holliday junction branch migration protein RuvA -
  BFM96_RS03485 - 714778..715344 (+) 567 WP_068990364.1 DNA-3-methyladenine glycosylase I -
  BFM96_RS03490 - 715337..715891 (+) 555 WP_068990366.1 GNAT family N-acetyltransferase -
  BFM96_RS03495 cinA 715944..717197 (+) 1254 WP_068990369.1 competence/damage-inducible protein A Machinery gene
  BFM96_RS03500 recA 717230..718429 (+) 1200 WP_068990372.1 recombinase RecA Machinery gene
  BFM96_RS03505 spx 718791..719189 (+) 399 WP_068990375.1 transcriptional regulator Spx -
  BFM96_RS03510 - 719327..719899 (+) 573 WP_068990378.1 SP0191 family lipoprotein -
  BFM96_RS03515 - 720098..720364 (+) 267 WP_068994144.1 IreB family regulatory phosphoprotein -
  BFM96_RS03520 ruvX 720364..720783 (+) 420 WP_068990381.1 Holliday junction resolvase RuvX -
  BFM96_RS03525 - 720802..721113 (+) 312 WP_068990383.1 DUF1292 domain-containing protein -
  BFM96_RS03530 - 721523..722758 (+) 1236 WP_068990385.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BFM96_RS03535 - 722829..723284 (+) 456 WP_068990390.1 SP_0198 family lipoprotein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 43263.27 Da        Isoelectric Point: 4.9703

>NTDB_id=194006 BFM96_RS03500 WP_068990372.1 717230..718429(+) (recA) [Streptococcus himalayensis strain HTS2]
MAKKQKKLEEITKKFGDERKKALDDALKTIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIADKLISSGAIDLLVVDSVA
ALVPRSEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGAEKDVNVGKETKIKVVKNKIAPPFKEALVEIMYGEGISQTGELIKIASDLEIIKKSGAWYSYKDDKIGQGSE
NAKKYLAEHPEVFEEIDRLVREHYGMPIGAEQPAENAPEAEEKDKKSKKAGKKDKETVEEVADTEEITLELDDAIEIED

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=194006 BFM96_RS03500 WP_068990372.1 717230..718429(+) (recA) [Streptococcus himalayensis strain HTS2]
ATGGCAAAGAAACAAAAAAAGTTAGAAGAAATCACCAAAAAATTTGGGGATGAACGAAAGAAAGCCTTAGACGATGCTCT
AAAGACAATCGAAAAAGACTTTGGAAAAGGCGCGATTATGCGTCTTGGAGAGAGGGCAGAGCAGAAAGTGCAAGTCATGA
GCTCAGGAAGTTTGGCTCTAGACATTGCTCTTGGTGCTGGAGGGTATCCAAAAGGTCGGATTATCGAGATTTACGGACCG
GAATCTTCTGGTAAGACCACGGTTGCCCTACATGCTGTTGCCCAGGCTCAAAAAGAGGGAGGAATTGCGGCCTTCATCGA
TGCTGAGCATGCACTTGATCCAGCTTATGCCCAAGCACTTGGGGTTAATATTGATGAGTTGTTGCTGTCTCAGCCAGACT
CTGGAGAGCAAGGTTTAGAAATTGCGGATAAGCTGATTTCGTCTGGAGCTATTGATTTGCTGGTTGTTGACTCAGTGGCA
GCCTTGGTGCCTCGTTCAGAGATTGATGGTGATATTGGCGACAATCACGTTGGTTTGCAGGCACGGATGATGAGCCAAGC
CATGCGTAAACTCTCTGCTTCTATCAATAAAACCAAGACCATTGCCATCTTTATCAACCAATTGCGGGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGCGGACGTGCCCTTAAATTCTATGCTTCTGTGCGTTTAGATGTTCGTGGA
AATACTCAAATCAAGGGTTCTGGTGCTGAAAAAGATGTCAATGTCGGTAAAGAAACCAAGATCAAGGTTGTGAAAAACAA
GATTGCTCCGCCATTTAAGGAAGCTTTGGTAGAAATCATGTACGGAGAAGGGATTTCACAGACTGGGGAGCTGATTAAGA
TTGCCTCAGATCTTGAGATTATCAAAAAGTCTGGTGCTTGGTATTCTTATAAAGATGATAAAATTGGGCAAGGCTCGGAA
AATGCCAAGAAATATTTGGCAGAACATCCAGAAGTGTTTGAAGAAATTGACCGCCTAGTTCGAGAGCATTATGGTATGCC
AATAGGAGCAGAGCAGCCAGCAGAAAATGCTCCAGAGGCAGAAGAAAAGGACAAAAAATCTAAAAAAGCAGGCAAAAAAG
ACAAGGAAACCGTTGAAGAGGTAGCCGATACCGAAGAAATCACCCTTGAATTGGATGATGCGATTGAAATTGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

82.161

99.749

0.82
  recA Streptococcus pneumoniae D39

82.161

99.749

0.82
  recA Streptococcus pneumoniae R6

82.161

99.749

0.82
  recA Streptococcus pneumoniae TIGR4

82.161

99.749

0.82
  recA Streptococcus mitis SK321

81.658

99.749

0.815
  recA Streptococcus mitis NCTC 12261

81.407

99.749

0.812
  recA Streptococcus mutans UA159

80.702

100

0.807
  recA Streptococcus pyogenes NZ131

79.449

100

0.794
  recA Lactococcus lactis subsp. cremoris KW2

75.872

86.216

0.654
  recA Latilactobacillus sakei subsp. sakei 23K

67.723

86.967

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

82.456

0.561
  recA Vibrio cholerae strain A1552

60.116

86.717

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.116

86.717

0.521
  recA Acinetobacter baumannii D1279779

62.805

82.206

0.516
  recA Acinetobacter baylyi ADP1

59.195

87.218

0.516
  recA Neisseria gonorrhoeae MS11

58.96

86.717

0.511
  recA Neisseria gonorrhoeae MS11

58.96

86.717

0.511
  recA Neisseria gonorrhoeae strain FA1090

58.96

86.717

0.511
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.963

81.203

0.511
  recA Glaesserella parasuis strain SC1401

59.412

85.213

0.506
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

82.707

0.496
  recA Ralstonia pseudosolanacearum GMI1000

58.912

82.957

0.489
  recA Pseudomonas stutzeri DSM 10701

59.385

81.454

0.484
  recA Helicobacter pylori strain NCTC11637

55.942

86.466

0.484
  recA Helicobacter pylori 26695

55.942

86.466

0.484
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

82.957

0.479

Multiple sequence alignment