Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F7310_RS00600 Genome accession   NZ_CP016796
Coordinates   114518..115552 (+) Length   344 a.a.
NCBI ID   WP_072711145.1    Uniprot ID   A0A1L4BQ25
Organism   Francisella uliginis strain TX07-7310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109518..120552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7310_RS00570 (F7310_00570) - 109672..111375 (-) 1704 WP_072711139.1 alpha-keto acid decarboxylase family protein -
  F7310_RS00575 (F7310_00575) - 111489..111845 (-) 357 WP_072711140.1 (2Fe-2S) ferredoxin domain-containing protein -
  F7310_RS00580 (F7310_00580) - 111932..112858 (+) 927 WP_072711141.1 S49 family peptidase -
  F7310_RS00585 (F7310_00585) - 112936..113475 (+) 540 WP_072711142.1 OmpH family outer membrane protein -
  F7310_RS00590 (F7310_00590) - 113605..114027 (+) 423 WP_072711143.1 rhodanese-like domain-containing protein -
  F7310_RS00595 (F7310_00595) secB 114049..114495 (+) 447 WP_072711144.1 protein-export chaperone SecB -
  F7310_RS00600 (F7310_00600) recA 114518..115552 (+) 1035 WP_072711145.1 recombinase RecA Machinery gene
  F7310_RS00605 (F7310_00605) - 115539..115991 (+) 453 WP_072711146.1 regulatory protein RecX -
  F7310_RS00610 (F7310_00610) ssb 116109..116600 (+) 492 WP_072711147.1 single-stranded DNA-binding protein Machinery gene
  F7310_RS00615 (F7310_00615) - 116780..117124 (-) 345 WP_072711148.1 hypothetical protein -
  F7310_RS10780 - 117372..117497 (+) 126 WP_257786353.1 hypothetical protein -
  F7310_RS00620 (F7310_00620) - 117929..119083 (+) 1155 WP_072711149.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37245.77 Da        Isoelectric Point: 5.7450

>NTDB_id=192304 F7310_RS00600 WP_072711145.1 114518..115552(+) (recA) [Francisella uliginis strain TX07-7310]
MSKEKALESALAQIEKQFGKGSVMKLGDQQAAHDIEVVPSGVIALDVALGIGGYPKGRVIEIYGHESSGKTTLTLLAIAQ
CQKQGGTAAFVDAEHALDPKYAKLLGVDVENLIVSQPDTGEQALEIADMLVRSGGVDIVVVDSVAALTPKAEIEGDMGDS
HMGLQARLMSQALRKLTANIKRSNTLVMFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVRKGGAIKDGTDINGNEI
KVKIVKNKVAPPFKQAEFELIYGEGISLEAELVDLGAKHNIIEKSGAWYSYKGKKIGQGKEKAKDYLKENTQERDEIERA
ILELLLPHKYAPQDSELATQDELI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=192304 F7310_RS00600 WP_072711145.1 114518..115552(+) (recA) [Francisella uliginis strain TX07-7310]
ATGAGTAAAGAAAAAGCTCTAGAGTCAGCCCTTGCCCAAATTGAAAAACAGTTTGGTAAAGGTTCTGTTATGAAGCTTGG
AGATCAGCAAGCGGCTCATGATATAGAAGTTGTACCATCAGGTGTTATAGCTCTAGATGTGGCACTAGGAATTGGTGGAT
ATCCCAAGGGTCGTGTAATCGAAATATATGGTCATGAGTCTTCAGGTAAGACAACTCTTACTTTATTAGCTATTGCTCAG
TGTCAAAAGCAAGGTGGCACAGCAGCATTCGTTGATGCAGAGCATGCATTAGATCCTAAATACGCTAAACTTTTAGGTGT
TGATGTTGAGAATTTAATTGTTTCTCAGCCAGATACTGGTGAACAAGCTTTGGAAATAGCTGATATGCTTGTACGCTCCG
GAGGAGTTGATATAGTGGTCGTTGACTCAGTAGCAGCTTTGACGCCAAAAGCTGAGATTGAAGGTGATATGGGTGACTCT
CATATGGGTCTACAAGCAAGATTAATGTCACAAGCTTTGAGAAAGTTAACAGCTAACATTAAGCGATCAAATACTTTGGT
TATGTTTATTAACCAAATTCGTATGAAGATAGGTGTTATGTTCGGTAACCCTGAAACTACCACTGGTGGAAATGCTCTTA
AATTCTATTCATCTGTGCGTTTAGAAGTTAGAAAAGGTGGTGCTATTAAAGATGGTACTGATATCAACGGTAATGAGATC
AAAGTTAAGATTGTCAAAAATAAAGTAGCTCCACCATTTAAACAAGCAGAGTTTGAGCTTATCTATGGTGAGGGTATCTC
GCTAGAAGCTGAACTGGTAGATTTAGGAGCAAAACATAATATCATAGAAAAATCAGGTGCTTGGTATAGCTATAAAGGTA
AGAAAATTGGCCAAGGGAAAGAGAAGGCTAAAGATTATCTAAAAGAGAATACTCAAGAACGTGATGAGATTGAAAGAGCA
ATACTTGAGCTTCTATTACCTCATAAATATGCACCACAAGATTCTGAATTAGCTACTCAAGATGAGCTTATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L4BQ25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

69.538

94.477

0.657
  recA Acinetobacter baylyi ADP1

69.231

94.477

0.654
  recA Neisseria gonorrhoeae strain FA1090

69.565

93.605

0.651
  recA Neisseria gonorrhoeae MS11

69.565

93.605

0.651
  recA Neisseria gonorrhoeae MS11

69.565

93.605

0.651
  recA Pseudomonas stutzeri DSM 10701

64.553

100

0.651
  recA Glaesserella parasuis strain SC1401

69.04

93.895

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.846

94.477

0.622
  recA Vibrio cholerae strain A1552

65.846

94.477

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

68.831

89.535

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

95.349

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.798

93.314

0.605
  recA Streptococcus pneumoniae R6

60.704

99.128

0.602
  recA Streptococcus pneumoniae TIGR4

60.704

99.128

0.602
  recA Streptococcus pneumoniae Rx1

60.704

99.128

0.602
  recA Streptococcus pneumoniae D39

60.704

99.128

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.346

90.698

0.602
  recA Helicobacter pylori strain NCTC11637

63.354

93.605

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

59.357

99.419

0.59
  recA Streptococcus mitis NCTC 12261

62.848

93.895

0.59
  recA Helicobacter pylori 26695

63.043

93.605

0.59
  recA Streptococcus mutans UA159

62.346

94.186

0.587
  recA Streptococcus mitis SK321

62.539

93.895

0.587
  recA Streptococcus pyogenes NZ131

62.229

93.895

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

93.314

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.895

0.558

Multiple sequence alignment