Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A6A10_RS01680 Genome accession   NZ_CP016604
Coordinates   352925..354019 (-) Length   364 a.a.
NCBI ID   WP_121124261.1    Uniprot ID   A0A420XEY6
Organism   Otariodibacter oris strain Baika1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 347925..359019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6A10_RS01630 (A6A10_01615) ubiK 349298..349561 (-) 264 WP_121124273.1 ubiquinone biosynthesis accessory factor UbiK -
  A6A10_RS01655 (A6A10_01640) aroE 350189..351028 (-) 840 WP_121124271.1 shikimate dehydrogenase -
  A6A10_RS01660 (A6A10_01645) - 351031..351585 (-) 555 WP_121124269.1 Sua5/YciO/YrdC/YwlC family protein -
  A6A10_RS01665 (A6A10_01650) - 351585..352118 (-) 534 WP_121124267.1 type I DNA topoisomerase -
  A6A10_RS01670 (A6A10_01655) yqfB 352105..352422 (-) 318 WP_121124265.1 N(4)-acetylcytidine aminohydrolase -
  A6A10_RS01675 (A6A10_01660) recX 352415..352864 (-) 450 WP_121124263.1 recombination regulator RecX -
  A6A10_RS01680 (A6A10_01665) recA 352925..354019 (-) 1095 WP_121124261.1 recombinase RecA Machinery gene
  A6A10_RS01685 (A6A10_01670) - 354127..354735 (-) 609 WP_121124259.1 aminotransferase class IV family protein -
  A6A10_RS01690 (A6A10_01675) - 354713..355681 (-) 969 WP_121124257.1 aminodeoxychorismate synthase component I -
  A6A10_RS01695 (A6A10_01680) thiB 355768..356754 (-) 987 WP_121124255.1 thiamine ABC transporter substrate binding subunit -
  A6A10_RS01700 (A6A10_01685) dctM 356982..358265 (-) 1284 WP_121124253.1 C4-dicarboxylate TRAP transporter large permease protein DctM -
  A6A10_RS01705 (A6A10_01690) - 358262..358888 (-) 627 WP_121124251.1 TRAP transporter small permease -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39100.76 Da        Isoelectric Point: 5.0686

>NTDB_id=189578 A6A10_RS01680 WP_121124261.1 352925..354019(-) (recA) [Otariodibacter oris strain Baika1]
MAEKKSSASATKYNEPDSKEKALAAALAQIEKQFGKGSIMKLGDTQQLDIESVSTGSIGLDLALGIGGLPMGRIVEIFGP
ESSGKTTLTLSVIAQAQKTGKTCAFIDAEHALDPVYAKKLGVDTDKLLISQPDNGEQALEICDALVRSGAVDVIIVDSVA
ALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR
SGVVKDGDEILGSETKVKVVKNKVSPPFRVAEFDIMYGEGISKVGEILGLAVAHNLIQKSGAWFSYNGEKIGQGKNNAIK
WLKDNPEHADKIEQDIRNLLMSNNEKSDLAPIENNDAEEVLEEI

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=189578 A6A10_RS01680 WP_121124261.1 352925..354019(-) (recA) [Otariodibacter oris strain Baika1]
ATGGCAGAAAAAAAATCATCAGCATCAGCAACTAAATATAATGAACCAGATAGCAAAGAAAAGGCACTGGCTGCTGCTCT
AGCCCAAATTGAAAAACAATTTGGTAAAGGCTCAATTATGAAATTGGGTGATACGCAACAATTAGATATTGAGTCAGTTT
CAACTGGATCTATCGGTTTAGATTTAGCGTTAGGCATTGGTGGTTTACCAATGGGACGAATTGTTGAGATTTTTGGACCA
GAATCTTCAGGTAAAACAACACTCACACTATCTGTTATCGCCCAAGCACAGAAAACAGGTAAAACTTGTGCGTTCATCGA
TGCTGAACATGCGTTAGATCCTGTTTATGCGAAAAAATTAGGCGTAGATACTGATAAATTACTTATTTCTCAACCTGATA
ATGGTGAACAAGCTCTTGAAATTTGTGATGCATTAGTGCGTTCGGGTGCGGTTGATGTCATCATTGTTGACTCTGTTGCA
GCACTGACACCAAAAGCTGAAATTGAAGGCGAAATGGGTGATTCTCACATGGGATTACAAGCCCGTTTAATGTCCCAAGC
CTTAAGAAAATTAACTGCAAATATCAAAGCAACCAACTGTTTAGTGGTATTCATTAACCAAATTCGTATGAAAATTGGTG
TGATGTTTGGTAATCCTGAAACCACAACTGGTGGTAATGCGCTTAAATTCTATGCATCTGTCCGTTTAGATATTCGTCGT
TCTGGTGTTGTAAAAGATGGCGATGAAATCTTAGGTAGTGAAACAAAAGTTAAAGTCGTTAAGAATAAAGTTTCACCACC
ATTCCGTGTTGCAGAATTCGATATTATGTACGGAGAAGGTATCTCTAAAGTTGGAGAAATTTTAGGTCTTGCAGTTGCTC
ACAATCTTATTCAAAAATCTGGTGCATGGTTCTCATACAACGGAGAAAAGATTGGACAAGGTAAAAACAATGCGATTAAA
TGGTTAAAAGATAACCCTGAGCATGCAGATAAAATTGAACAAGATATTAGAAATTTACTCATGTCTAATAATGAAAAGTC
AGATCTTGCACCAATTGAAAACAATGATGCTGAAGAAGTATTAGAAGAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420XEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

84.393

95.055

0.802
  recA Pseudomonas stutzeri DSM 10701

71.345

93.956

0.67
  recA Acinetobacter baylyi ADP1

70.231

95.055

0.668
  recA Vibrio cholerae strain A1552

73.006

89.56

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.006

89.56

0.654
  recA Neisseria gonorrhoeae MS11

72.84

89.011

0.648
  recA Neisseria gonorrhoeae MS11

72.84

89.011

0.648
  recA Neisseria gonorrhoeae strain FA1090

72.84

89.011

0.648
  recA Acinetobacter baumannii D1279779

72.086

89.56

0.646
  recA Ralstonia pseudosolanacearum GMI1000

72.347

85.44

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.566

91.209

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.325

88.736

0.58
  recA Helicobacter pylori 26695

60.58

94.78

0.574
  recA Helicobacter pylori strain NCTC11637

60.29

94.78

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

64.263

87.637

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.006

90.385

0.56
  recA Streptococcus mitis NCTC 12261

62.229

88.736

0.552
  recA Streptococcus mitis SK321

61.92

88.736

0.549
  recA Streptococcus pneumoniae Rx1

61.42

89.011

0.547
  recA Streptococcus pneumoniae D39

61.42

89.011

0.547
  recA Streptococcus pneumoniae R6

61.42

89.011

0.547
  recA Streptococcus pneumoniae TIGR4

61.42

89.011

0.547
  recA Streptococcus pyogenes NZ131

60.923

89.286

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.112

93.132

0.541
  recA Streptococcus mutans UA159

60.615

89.286

0.541
  recA Lactococcus lactis subsp. cremoris KW2

60.062

88.736

0.533

Multiple sequence alignment