Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I858_RS10575 Genome accession   NZ_CP016540
Coordinates   2051161..2052225 (-) Length   354 a.a.
NCBI ID   WP_049693242.1    Uniprot ID   A0A1B1S4E1
Organism   Planococcus versutus strain L10.15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2046161..2057225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS10560 (I858_013545) - 2047727..2048155 (-) 429 WP_049693240.1 RicAFT regulatory complex protein RicA family protein -
  I858_RS10565 (I858_013540) - 2048463..2049260 (-) 798 WP_049693463.1 TIGR00282 family metallophosphoesterase -
  I858_RS10570 (I858_013535) rny 2049326..2050882 (-) 1557 WP_049693241.1 ribonuclease Y -
  I858_RS10575 (I858_013530) recA 2051161..2052225 (-) 1065 WP_049693242.1 recombinase RecA Machinery gene
  I858_RS10580 (I858_013525) cinA 2052400..2053653 (-) 1254 WP_049693243.1 competence/damage-inducible protein A Machinery gene
  I858_RS10585 (I858_013520) pgsA 2053678..2054256 (-) 579 WP_049693244.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I858_RS10590 (I858_013515) - 2054306..2055166 (-) 861 WP_049693245.1 helix-turn-helix domain-containing protein -
  I858_RS10595 (I858_013510) - 2055184..2055984 (-) 801 WP_049693246.1 DUF3388 domain-containing protein -
  I858_RS10600 (I858_013505) ymfI 2056090..2056809 (-) 720 WP_049693247.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38405.66 Da        Isoelectric Point: 5.0941

>NTDB_id=189035 I858_RS10575 WP_049693242.1 2051161..2052225(-) (recA) [Planococcus versutus strain L10.15]
MSDRKAALDMALKQIEKQFGKGSVMKLGEKTDRNISSVSSGSLALDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNEERIGQGRENVKQFLLKNPEIRNEISNK
IRESYGMSAATYTIAANKDEAEDFNLLLDDEDEK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=189035 I858_RS10575 WP_049693242.1 2051161..2052225(-) (recA) [Planococcus versutus strain L10.15]
TTGAGCGATCGTAAAGCAGCATTAGACATGGCGTTAAAACAAATAGAAAAGCAATTCGGTAAAGGTTCTGTCATGAAATT
GGGAGAAAAAACCGACCGTAATATATCATCCGTTTCAAGTGGTTCATTAGCATTGGATACAGCACTAGGAATAGGTGGAT
ATCCACGTGGTCGTGTAATTGAAATTTATGGTCCAGAAAGTTCAGGTAAAACTACTGTTTCGCTTCATGCTATTGCAGAA
GTTCAAGCTACTGGCGGAACAGCTGCGTTTATTGATGCTGAACACGCATTAGACCCGGTATATGCAAAAAATCTTGGCGT
TAATATTGATGAATTATTACTTTCTCAACCAGATACTGGGGAACAAGCACTTGAAATCGCTGAAGCATTAGTACGCAGTG
GCGCTGTTGATATCGTCGTTGTCGATTCAGTGGCAGCACTAGTTCCAAAAGCTGAAATCGAAGGCGAAATGGGCGATTCG
CATATGGGGTTACAAGCGCGTTTAATGTCTCAAGCACTACGTAAATTGTCAGGTGTTATTAACAAATCCAATACGATTGT
TATTTTCATAAACCAAATTCGTGAAAAAATTGGTGTGATGTTTGGTAATCCAGAAACAACTCCTGGTGGACGTGCGTTGA
AATTCTATTCGTCTGTCCGTTTAGAAGTACGTCGTGCTGAAGCATTAAAATCAGGAACTGAAATTATTGGTAACAGAACA
AAAATTAAAGTCGTCAAAAACAAAGTAGCTCCGCCGTTCCGTACTGCTGAAGTCGATATTATGTACGGAAAAGGGATTTC
ACGAGAAGGTGAAATTGTAGATATTGGTTCTGATTTAGAAATTATTCAAAAAAGCGGATCGTGGTATTCGTATAACGAAG
AACGCATTGGTCAAGGTCGTGAAAACGTTAAGCAATTCTTGCTTAAAAATCCAGAAATCCGCAATGAAATATCTAATAAG
ATTCGTGAATCTTATGGTATGTCAGCAGCCACTTATACAATCGCTGCAAACAAAGATGAAGCGGAAGATTTTAATCTTTT
GCTTGATGATGAAGATGAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1S4E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.404

92.373

0.78
  recA Latilactobacillus sakei subsp. sakei 23K

71.307

99.435

0.709
  recA Streptococcus mutans UA159

66.389

100

0.675
  recA Streptococcus pyogenes NZ131

66.011

100

0.664
  recA Streptococcus mitis NCTC 12261

63.912

100

0.655
  recA Streptococcus mitis SK321

63.361

100

0.65
  recA Acinetobacter baylyi ADP1

64.723

96.893

0.627
  recA Streptococcus pneumoniae Rx1

66.97

93.22

0.624
  recA Streptococcus pneumoniae D39

66.97

93.22

0.624
  recA Streptococcus pneumoniae R6

66.97

93.22

0.624
  recA Streptococcus pneumoniae TIGR4

66.97

93.22

0.624
  recA Neisseria gonorrhoeae MS11

66.869

92.938

0.621
  recA Neisseria gonorrhoeae MS11

66.869

92.938

0.621
  recA Neisseria gonorrhoeae strain FA1090

66.869

92.938

0.621
  recA Acinetobacter baumannii D1279779

62.824

98.023

0.616
  recA Glaesserella parasuis strain SC1401

62.824

98.023

0.616
  recA Lactococcus lactis subsp. cremoris KW2

65.455

93.22

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.854

92.655

0.61
  recA Ralstonia pseudosolanacearum GMI1000

68.153

88.701

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.09

0.602
  recA Pseudomonas stutzeri DSM 10701

64.329

92.655

0.596
  recA Vibrio cholerae strain A1552

65.421

90.678

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

90.678

0.593
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Helicobacter pylori 26695

64.308

91.808

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

90.395

0.556

Multiple sequence alignment