Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I858_RS10580 Genome accession   NZ_CP016540
Coordinates   2052400..2053653 (-) Length   417 a.a.
NCBI ID   WP_049693243.1    Uniprot ID   -
Organism   Planococcus versutus strain L10.15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2047400..2058653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS10560 (I858_013545) - 2047727..2048155 (-) 429 WP_049693240.1 RicAFT regulatory complex protein RicA family protein -
  I858_RS10565 (I858_013540) - 2048463..2049260 (-) 798 WP_049693463.1 TIGR00282 family metallophosphoesterase -
  I858_RS10570 (I858_013535) rny 2049326..2050882 (-) 1557 WP_049693241.1 ribonuclease Y -
  I858_RS10575 (I858_013530) recA 2051161..2052225 (-) 1065 WP_049693242.1 recombinase RecA Machinery gene
  I858_RS10580 (I858_013525) cinA 2052400..2053653 (-) 1254 WP_049693243.1 competence/damage-inducible protein A Machinery gene
  I858_RS10585 (I858_013520) pgsA 2053678..2054256 (-) 579 WP_049693244.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I858_RS10590 (I858_013515) - 2054306..2055166 (-) 861 WP_049693245.1 helix-turn-helix domain-containing protein -
  I858_RS10595 (I858_013510) - 2055184..2055984 (-) 801 WP_049693246.1 DUF3388 domain-containing protein -
  I858_RS10600 (I858_013505) ymfI 2056090..2056809 (-) 720 WP_049693247.1 elongation factor P 5-aminopentanone reductase -
  I858_RS10605 (I858_013500) yfmH 2056806..2058107 (-) 1302 WP_049693248.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45348.62 Da        Isoelectric Point: 4.9118

>NTDB_id=189036 I858_RS10580 WP_049693243.1 2052400..2053653(-) (cinA) [Planococcus versutus strain L10.15]
MNAEIIAVGSELLLGQITNTNARFLSNHLAELGINVYYHTVVGDNPARLEDAITIAENRADLILFTGGLGPTKDDLTKEA
IARHLNTSLESNEEALNSIVAYFERAGRSMTENNKKQALVLKDSTVLVNHNGMAPGMMYTKDERVYILLPGPPKEMEPMF
QFEAKPKLASLLNKADVILSHVLRFYGIGEAELEDRLHHILEKQTNPTIAPLATDGEVTLRITAKTTTTEKAWQLINGAK
DEILDLVGDYLYGYDNDSLASKVIELLKDQGKTISAAESLTAGLFQSELASIAGASAVLSGGVITYNEEMKVHQLGLSAE
MLAEYGVVSEQTALAMAEAVQQKFKTNISVSLTGAAGPDAHGDQPAGTVWIAVATDQGTSSYRLQLSGMRNTNRLRAVKL
ALYYVIRTLIEEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=189036 I858_RS10580 WP_049693243.1 2052400..2053653(-) (cinA) [Planococcus versutus strain L10.15]
ATGAATGCAGAAATTATTGCAGTAGGTTCAGAATTATTGTTAGGTCAAATCACCAATACAAATGCTCGTTTCTTGTCTAA
CCATTTAGCAGAGCTCGGCATTAATGTGTATTACCATACCGTAGTAGGAGACAATCCAGCTCGCTTAGAAGATGCTATTA
CAATTGCGGAAAATCGGGCAGATCTTATCCTATTTACAGGAGGATTAGGCCCAACTAAAGATGACTTAACAAAAGAAGCG
ATTGCACGTCACTTGAACACGTCACTTGAAAGTAACGAAGAAGCATTAAATTCAATCGTCGCTTATTTTGAACGTGCAGG
TCGTTCGATGACAGAGAACAATAAAAAACAAGCGCTCGTATTAAAAGACAGCACGGTTCTTGTGAACCATAATGGCATGG
CACCGGGCATGATGTACACAAAAGATGAACGCGTGTATATTTTACTGCCGGGACCACCAAAAGAAATGGAGCCAATGTTT
CAATTTGAAGCAAAGCCAAAGCTTGCTAGTTTATTAAACAAAGCAGATGTGATTTTGTCGCATGTCCTACGTTTTTATGG
AATTGGAGAAGCAGAACTTGAAGACCGTCTACACCATATTCTTGAAAAGCAGACCAACCCGACCATCGCACCGCTTGCGA
CTGACGGGGAAGTGACGTTGCGCATTACAGCAAAAACTACTACAACTGAAAAAGCTTGGCAATTAATCAATGGCGCAAAA
GATGAAATTCTAGACCTCGTAGGGGATTATCTTTACGGCTATGACAATGATTCACTTGCATCGAAAGTAATTGAACTGCT
AAAAGATCAAGGCAAAACGATTTCGGCTGCTGAAAGCTTAACAGCGGGACTATTTCAGTCTGAGTTAGCTTCTATTGCTG
GTGCGAGTGCTGTATTATCAGGCGGTGTAATTACTTACAATGAAGAAATGAAAGTTCACCAACTCGGCTTATCTGCTGAA
ATGCTTGCTGAATATGGAGTCGTCAGTGAACAAACAGCACTAGCGATGGCCGAAGCTGTACAACAAAAATTTAAAACAAA
CATTAGTGTTTCTTTAACAGGAGCAGCGGGACCTGATGCACATGGCGATCAGCCAGCAGGCACTGTGTGGATAGCAGTAG
CAACCGATCAAGGAACCTCTTCCTACCGGCTCCAGTTATCAGGTATGCGCAATACAAACCGTTTAAGAGCGGTGAAATTA
GCGCTTTATTACGTAATCCGTACATTAATTGAAGAAGATGCGCGCAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.755

97.842

0.487
  cinA Streptococcus mutans UA159

45.301

99.52

0.451
  cinA Streptococcus mitis SK321

44.313

100

0.448
  cinA Streptococcus pneumoniae TIGR4

44.076

100

0.446
  cinA Streptococcus mitis NCTC 12261

44.076

100

0.446
  cinA Streptococcus pneumoniae Rx1

43.839

100

0.444
  cinA Streptococcus pneumoniae R6

43.839

100

0.444
  cinA Streptococcus pneumoniae D39

43.602

100

0.441
  cinA Streptococcus suis isolate S10

39.286

94.005

0.369

Multiple sequence alignment