Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBI08_RS10845 Genome accession   NZ_CP016537
Coordinates   2140504..2141565 (-) Length   353 a.a.
NCBI ID   WP_008497921.1    Uniprot ID   A0A1C7DQ26
Organism   Planococcus halocryophilus strain DSM 24743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2135504..2146565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS10830 (BBI08_06510) - 2137030..2137458 (-) 429 WP_008497917.1 RicAFT regulatory complex protein RicA family protein -
  BBI08_RS10835 (BBI08_06515) - 2137784..2138581 (-) 798 WP_065528083.1 TIGR00282 family metallophosphoesterase -
  BBI08_RS10840 (BBI08_06520) rny 2138648..2140207 (-) 1560 WP_065528084.1 ribonuclease Y -
  BBI08_RS10845 (BBI08_06525) recA 2140504..2141565 (-) 1062 WP_008497921.1 recombinase RecA Machinery gene
  BBI08_RS10850 (BBI08_06530) cinA 2141740..2142993 (-) 1254 WP_008497922.1 competence/damage-inducible protein A Machinery gene
  BBI08_RS10855 (BBI08_06535) pgsA 2143016..2143594 (-) 579 WP_040850891.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBI08_RS10860 (BBI08_06540) - 2143644..2144513 (-) 870 WP_257785797.1 helix-turn-helix domain-containing protein -
  BBI08_RS10865 (BBI08_06545) - 2144522..2145322 (-) 801 WP_065528085.1 YmfK family protein -
  BBI08_RS10870 (BBI08_06550) ymfI 2145429..2146148 (-) 720 WP_065528086.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38271.61 Da        Isoelectric Point: 5.2089

>NTDB_id=188921 BBI08_RS10845 WP_008497921.1 2140504..2141565(-) (recA) [Planococcus halocryophilus strain DSM 24743]
MSDRKAALDMALKQIEKQFGKGSVMKLGEKTDRNISSVSSGSLALDTALGIGGYPRGRVIEVYGPESSGKTTVSLHAIAE
VQAIGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNEERIGQGRENVKQFLLKNPEIRNEISNK
IRESYGMAAATYTIAATKDEPEDFNLLIDEDDK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=188921 BBI08_RS10845 WP_008497921.1 2140504..2141565(-) (recA) [Planococcus halocryophilus strain DSM 24743]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCATTAAAACAAATAGAAAAGCAATTCGGTAAAGGTTCTGTCATGAAATT
GGGGGAAAAAACCGACCGTAATATATCATCCGTATCAAGTGGTTCATTGGCATTGGATACAGCATTAGGAATAGGCGGTT
ATCCACGTGGACGGGTAATAGAAGTTTACGGACCTGAAAGTTCAGGTAAAACGACGGTTTCTCTTCACGCGATTGCAGAA
GTTCAAGCAATTGGTGGAACTGCGGCGTTTATCGATGCAGAGCACGCTTTAGATCCAGTTTACGCAAAAAATTTGGGTGT
TAATATTGATGAATTATTATTGTCGCAACCGGACACAGGTGAGCAAGCATTGGAAATCGCTGAAGCACTTGTTCGCAGTG
GAGCAGTTGATATTGTCGTTGTCGATTCAGTAGCAGCATTAGTACCAAAAGCTGAAATTGAAGGCGAGATGGGCGATTCG
CATATGGGATTGCAAGCACGTTTAATGTCACAAGCCCTTCGTAAATTATCTGGTGTTATTAACAAATCTAATACCATTGT
TATTTTTATTAACCAAATTCGTGAGAAAATTGGGGTAATGTTTGGTAACCCAGAAACAACACCTGGTGGTCGCGCATTGA
AATTCTATTCGTCTGTTCGTTTAGAAGTACGTCGTGCAGAAGCATTAAAATCAGGTACAGAAATTATTGGTAACAGAACG
AAGATAAAAGTTGTGAAAAATAAAGTAGCTCCACCATTCCGTACTGCTGAAGTGGATATTATGTACGGAAAAGGGATTTC
TCGTGAAGGTGAAATCGTGGATATCGGTTCTGATTTGGAAATTATCCAAAAAAGTGGTTCATGGTACTCATATAACGAAG
AACGAATTGGTCAAGGCCGTGAAAATGTTAAGCAATTCTTGCTTAAAAACCCGGAAATCCGTAACGAGATTTCTAATAAA
ATCCGTGAATCTTACGGGATGGCAGCAGCTACGTATACAATTGCTGCAACTAAAGATGAACCAGAAGACTTTAATCTTCT
AATTGATGAAGACGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DQ26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.709

92.635

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

71.264

98.584

0.703
  recA Streptococcus mutans UA159

66.111

100

0.674
  recA Streptococcus pyogenes NZ131

65.352

100

0.657
  recA Streptococcus mitis NCTC 12261

65.306

97.167

0.635
  recA Streptococcus pneumoniae R6

64.183

98.867

0.635
  recA Streptococcus pneumoniae Rx1

64.183

98.867

0.635
  recA Streptococcus pneumoniae D39

64.183

98.867

0.635
  recA Streptococcus pneumoniae TIGR4

64.183

98.867

0.635
  recA Streptococcus mitis SK321

65.015

97.167

0.632
  recA Acinetobacter baylyi ADP1

64.348

97.734

0.629
  recA Neisseria gonorrhoeae MS11

64.535

97.45

0.629
  recA Neisseria gonorrhoeae MS11

64.535

97.45

0.629
  recA Neisseria gonorrhoeae strain FA1090

64.535

97.45

0.629
  recA Acinetobacter baumannii D1279779

62.609

97.734

0.612
  recA Lactococcus lactis subsp. cremoris KW2

65.152

93.484

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.549

92.918

0.609
  recA Pseudomonas stutzeri DSM 10701

63.422

96.034

0.609
  recA Ralstonia pseudosolanacearum GMI1000

68.051

88.669

0.603
  recA Glaesserella parasuis strain SC1401

66.355

90.935

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Helicobacter pylori strain NCTC11637

62.353

96.317

0.601
  recA Helicobacter pylori 26695

62.353

96.317

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

90.935

0.592
  recA Vibrio cholerae strain A1552

65.109

90.935

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

90.652

0.555

Multiple sequence alignment