Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BBI08_RS10850 Genome accession   NZ_CP016537
Coordinates   2141740..2142993 (-) Length   417 a.a.
NCBI ID   WP_008497922.1    Uniprot ID   A0A1C7DQ93
Organism   Planococcus halocryophilus strain DSM 24743     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2136740..2147993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS10830 (BBI08_06510) - 2137030..2137458 (-) 429 WP_008497917.1 RicAFT regulatory complex protein RicA family protein -
  BBI08_RS10835 (BBI08_06515) - 2137784..2138581 (-) 798 WP_065528083.1 TIGR00282 family metallophosphoesterase -
  BBI08_RS10840 (BBI08_06520) rny 2138648..2140207 (-) 1560 WP_065528084.1 ribonuclease Y -
  BBI08_RS10845 (BBI08_06525) recA 2140504..2141565 (-) 1062 WP_008497921.1 recombinase RecA Machinery gene
  BBI08_RS10850 (BBI08_06530) cinA 2141740..2142993 (-) 1254 WP_008497922.1 competence/damage-inducible protein A Machinery gene
  BBI08_RS10855 (BBI08_06535) pgsA 2143016..2143594 (-) 579 WP_040850891.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBI08_RS10860 (BBI08_06540) - 2143644..2144513 (-) 870 WP_257785797.1 helix-turn-helix domain-containing protein -
  BBI08_RS10865 (BBI08_06545) - 2144522..2145322 (-) 801 WP_065528085.1 YmfK family protein -
  BBI08_RS10870 (BBI08_06550) ymfI 2145429..2146148 (-) 720 WP_065528086.1 elongation factor P 5-aminopentanone reductase -
  BBI08_RS10875 (BBI08_06555) yfmH 2146145..2147446 (-) 1302 WP_008497926.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45559.07 Da        Isoelectric Point: 4.9445

>NTDB_id=188922 BBI08_RS10850 WP_008497922.1 2141740..2142993(-) (cinA) [Planococcus halocryophilus strain DSM 24743]
MNAEIIAVGSELLLGQITNTNARFLSNHLAELGINVYYHTVVGDNPTRLEDAIKIAENRADLILFTGGLGPTKDDLTKEA
IARHLDTTLEMNVEALDSIVAYFERAGLPMTENNKKQALVLKDSDVLVNYNGMAPGMMYKKDERVYILLPGPPKEMEPMF
QFEAKPKLASLLNKADIILSHVLRFYGIGEAELEDRLHHILEKQTNPTIAPLAADGEVTIRITAKTNTTEEAWKLIEGTK
EEILDVVGNYLYGYDNDSLASKVVELLKHQGKTISAAESLTAGLFQSELASVPGASAVLSGGVITYNEEMKVHQLGLSAE
LLAEYGVVSEQTALAMAEAVRAKFKTDISVSLTGAAGPDAHGDQPAGTVWIGIATEETSKSYRLQLSGMRNTNRLRAVKL
ALYYVIRTLTEENARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=188922 BBI08_RS10850 WP_008497922.1 2141740..2142993(-) (cinA) [Planococcus halocryophilus strain DSM 24743]
ATGAACGCAGAAATTATTGCGGTAGGTTCAGAATTATTATTAGGACAAATCACCAATACCAATGCTCGTTTTTTGTCTAA
TCATTTGGCGGAACTTGGCATTAATGTGTATTACCATACCGTAGTCGGTGACAATCCGACTCGGTTAGAAGATGCTATCA
AGATTGCGGAAAATCGAGCAGATCTTATTTTGTTTACTGGTGGACTAGGTCCCACAAAAGATGATTTGACGAAAGAAGCA
ATTGCTCGTCATTTAGATACGACACTTGAAATGAATGTGGAAGCGTTAGATTCAATCGTCGCATATTTTGAACGTGCAGG
ACTTCCAATGACGGAGAATAATAAAAAGCAAGCATTGGTCTTAAAAGACAGTGACGTTCTTGTTAACTATAACGGCATGG
CTCCAGGCATGATGTACAAAAAAGATGAACGTGTTTATATTTTGCTACCAGGACCGCCGAAAGAAATGGAGCCAATGTTC
CAATTCGAGGCAAAACCTAAACTTGCAAGCTTATTAAACAAAGCGGATATTATTTTGTCACACGTCTTGCGCTTTTATGG
TATCGGTGAAGCAGAACTCGAAGACCGTTTACACCATATTCTCGAAAAACAAACAAACCCGACAATTGCACCACTCGCTG
CGGATGGGGAAGTAACTATACGCATTACAGCTAAAACCAATACAACAGAAGAAGCGTGGAAGTTGATTGAGGGAACTAAA
GAGGAAATTTTAGATGTCGTAGGTAATTATCTGTATGGTTATGATAATGATTCACTCGCCTCTAAAGTAGTTGAGCTCTT
GAAACATCAAGGTAAAACAATATCTGCAGCCGAAAGTTTAACTGCAGGACTTTTTCAGTCTGAATTGGCTTCGGTTCCAG
GAGCAAGTGCTGTTTTGTCTGGTGGAGTCATTACGTATAATGAAGAAATGAAAGTTCATCAGCTTGGCTTATCAGCTGAG
TTACTTGCTGAATACGGCGTTGTTAGTGAGCAAACAGCATTAGCTATGGCAGAAGCTGTACGAGCTAAATTTAAAACCGA
TATTAGCGTTTCATTAACAGGTGCAGCAGGACCGGACGCGCATGGTGATCAGCCAGCAGGAACTGTTTGGATTGGAATAG
CAACAGAGGAAACTTCTAAATCTTATCGCCTTCAATTGTCAGGAATGCGCAATACCAATCGTTTACGAGCGGTTAAACTC
GCCTTGTATTATGTTATCCGCACCTTAACAGAAGAAAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DQ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.244

98.321

0.494
  cinA Streptococcus mutans UA159

45.652

99.281

0.453
  cinA Streptococcus mitis SK321

45.34

95.204

0.432
  cinA Streptococcus mitis NCTC 12261

44.836

95.204

0.427
  cinA Streptococcus pneumoniae TIGR4

44.584

95.204

0.424
  cinA Streptococcus pneumoniae Rx1

44.332

95.204

0.422
  cinA Streptococcus pneumoniae R6

44.332

95.204

0.422
  cinA Streptococcus pneumoniae D39

44.081

95.204

0.42

Multiple sequence alignment