Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBH88_RS11690 Genome accession   NZ_CP016534
Coordinates   2324771..2325832 (-) Length   353 a.a.
NCBI ID   WP_006828218.1    Uniprot ID   A0A1C7DGA4
Organism   Planococcus antarcticus DSM 14505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319771..2330832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH88_RS11675 (BBH88_09815) - 2321148..2321576 (-) 429 WP_006828215.1 RicAFT regulatory complex protein RicA family protein -
  BBH88_RS11680 (BBH88_09810) - 2321877..2322674 (-) 798 WP_006828216.1 TIGR00282 family metallophosphoesterase -
  BBH88_RS11685 (BBH88_09805) rny 2322740..2324299 (-) 1560 WP_006828217.1 ribonuclease Y -
  BBH88_RS11690 (BBH88_09800) recA 2324771..2325832 (-) 1062 WP_006828218.1 recombinase RecA Machinery gene
  BBH88_RS11695 (BBH88_09795) cinA 2326007..2327260 (-) 1254 WP_006828219.1 competence/damage-inducible protein A Machinery gene
  BBH88_RS11700 (BBH88_09790) pgsA 2327285..2327863 (-) 579 WP_006828220.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBH88_RS11705 (BBH88_09785) - 2327913..2328782 (-) 870 WP_006828221.1 RodZ domain-containing protein -
  BBH88_RS11710 (BBH88_09780) - 2328800..2329600 (-) 801 WP_006828222.1 YmfK family protein -
  BBH88_RS11715 (BBH88_09775) ymfI 2329704..2330423 (-) 720 WP_006828223.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38272.55 Da        Isoelectric Point: 4.9959

>NTDB_id=188883 BBH88_RS11690 WP_006828218.1 2324771..2325832(-) (recA) [Planococcus antarcticus DSM 14505]
MSDRKAALDMALKQIEKQFGKGSVMKLGEKTDRNISSVSSGSLALDTALGIGGYPRGRVIEVYGPESSGKTTVSLHAIAE
VQAIGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGIINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT
KIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSELEIIQKSGSWYSYNDERIGQGRENVKQFLLKNPEVRNEIAGK
IRESYGMTAASYTIAGNKEEPEDFNLLLDEDDE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=188883 BBH88_RS11690 WP_006828218.1 2324771..2325832(-) (recA) [Planococcus antarcticus DSM 14505]
TTGAGCGATCGTAAAGCAGCATTAGACATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGTTCTGTCATGAAATT
GGGGGAAAAAACCGACCGTAATATATCATCCGTTTCAAGTGGTTCGTTGGCATTGGATACAGCGTTGGGAATAGGCGGTT
ATCCGCGGGGACGTGTAATTGAAGTTTACGGCCCTGAAAGCTCAGGTAAAACAACAGTCTCTCTTCATGCAATTGCAGAA
GTACAGGCCATAGGAGGAACAGCCGCATTCATCGATGCAGAGCATGCATTGGATCCGGTTTATGCAAAAAACCTTGGCGT
CAATATCGATGAATTGCTTCTGTCTCAGCCAGATACTGGCGAGCAGGCTTTGGAAATCACTGAAGCGCTTGTCCGAAGCG
GAGCAGTCGATATCGTAGTTGTCGACTCAGTGGCTGCATTAGTACCAAAAGCTGAGATCGAAGGCGAAATGGGCGATTCC
CATATGGGATTACAGGCACGCTTGATGTCACAGGCTCTTCGAAAATTGTCAGGGATTATCAACAAATCGAATACTATTGT
TATTTTCATTAACCAAATCCGCGAAAAAATCGGTGTTATGTTTGGGAATCCAGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTATTCATCTGTCCGTCTAGAAGTACGCCGTGCAGAAGCATTGAAATCCGGCACTGAAATTATTGGCAACAGAACG
AAGATCAAAATTGTAAAAAACAAAGTGGCTCCACCGTTCCGTACAGCTGAAGTTGACATCATGTACGGAAAAGGAATTTC
CCGTGAAGGTGAAATCGTGGATATCGGTTCTGAACTGGAAATCATCCAAAAGAGCGGTTCTTGGTATTCATATAATGACG
AACGTATTGGTCAAGGCCGTGAAAACGTCAAGCAGTTCCTTTTGAAAAATCCAGAAGTTCGCAATGAAATTGCTGGAAAA
ATCCGTGAATCTTACGGGATGACCGCAGCTTCCTATACGATTGCTGGCAATAAAGAAGAACCTGAAGATTTCAATCTATT
GCTTGACGAAGATGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DGA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.792

92.635

0.776
  recA Latilactobacillus sakei subsp. sakei 23K

70.655

99.433

0.703
  recA Streptococcus mutans UA159

65.556

100

0.669
  recA Streptococcus pyogenes NZ131

65.07

100

0.654
  recA Acinetobacter baylyi ADP1

63.506

98.584

0.626
  recA Streptococcus mitis SK321

64.431

97.167

0.626
  recA Streptococcus mitis NCTC 12261

66.061

93.484

0.618
  recA Streptococcus pneumoniae Rx1

65.758

93.484

0.615
  recA Streptococcus pneumoniae D39

65.758

93.484

0.615
  recA Streptococcus pneumoniae R6

65.758

93.484

0.615
  recA Streptococcus pneumoniae TIGR4

65.758

93.484

0.615
  recA Neisseria gonorrhoeae strain FA1090

65.957

93.201

0.615
  recA Neisseria gonorrhoeae MS11

65.957

93.201

0.615
  recA Neisseria gonorrhoeae MS11

65.957

93.201

0.615
  recA Lactococcus lactis subsp. cremoris KW2

65.455

93.484

0.612
  recA Ralstonia pseudosolanacearum GMI1000

66.055

92.635

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

92.918

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Acinetobacter baumannii D1279779

61.628

97.45

0.601
  recA Glaesserella parasuis strain SC1401

65.732

90.935

0.598
  recA Pseudomonas stutzeri DSM 10701

63.83

93.201

0.595
  recA Vibrio cholerae strain A1552

64.486

90.935

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

90.935

0.586
  recA Helicobacter pylori strain NCTC11637

63.692

92.068

0.586
  recA Helicobacter pylori 26695

63.692

92.068

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

90.652

0.558

Multiple sequence alignment