Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BBH88_RS11695 Genome accession   NZ_CP016534
Coordinates   2326007..2327260 (-) Length   417 a.a.
NCBI ID   WP_006828219.1    Uniprot ID   A0A1C7DG94
Organism   Planococcus antarcticus DSM 14505     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2321007..2332260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH88_RS11675 (BBH88_09815) - 2321148..2321576 (-) 429 WP_006828215.1 RicAFT regulatory complex protein RicA family protein -
  BBH88_RS11680 (BBH88_09810) - 2321877..2322674 (-) 798 WP_006828216.1 TIGR00282 family metallophosphoesterase -
  BBH88_RS11685 (BBH88_09805) rny 2322740..2324299 (-) 1560 WP_006828217.1 ribonuclease Y -
  BBH88_RS11690 (BBH88_09800) recA 2324771..2325832 (-) 1062 WP_006828218.1 recombinase RecA Machinery gene
  BBH88_RS11695 (BBH88_09795) cinA 2326007..2327260 (-) 1254 WP_006828219.1 competence/damage-inducible protein A Machinery gene
  BBH88_RS11700 (BBH88_09790) pgsA 2327285..2327863 (-) 579 WP_006828220.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBH88_RS11705 (BBH88_09785) - 2327913..2328782 (-) 870 WP_006828221.1 RodZ domain-containing protein -
  BBH88_RS11710 (BBH88_09780) - 2328800..2329600 (-) 801 WP_006828222.1 YmfK family protein -
  BBH88_RS11715 (BBH88_09775) ymfI 2329704..2330423 (-) 720 WP_006828223.1 elongation factor P 5-aminopentanone reductase -
  BBH88_RS11720 (BBH88_09770) yfmH 2330423..2331721 (-) 1299 WP_065536765.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45540.81 Da        Isoelectric Point: 4.8151

>NTDB_id=188884 BBH88_RS11695 WP_006828219.1 2326007..2327260(-) (cinA) [Planococcus antarcticus DSM 14505]
MNAEVIAVGSELLLGQITNTNARFLSNHLAELGINVYYHTVVGDNPDRLEDAIKIAENRADLILFTGGLGPTKDDLTKES
IAGHLNTTLEMNEEALDSIVAYFERAGRPMTENNKKQALVLKDSDILVNYNGMAPGMMYKKAECVYILLPGPPKEMEPMF
QFEAKPKLAHLLNKEDVILSHVLRFYGIGEAELEDRLHHILDKQSNPTIAPLAADGEVTLRITAKTNTTEEAWQLINGAK
DEILDLVGQYLYGYDNDSLASKSIELLKKQDKTISAAESLTAGLFQSELASVSGASAVLAGGVITYNEEMKVHQLGLSAE
LLAEYGVVSEQTALAMAEAVRDKFKTDISVSLTGAAGPDGHGDQPAGTIWIGIATERGTQSYRLQLSGMRNTNRLRAVKL
ALHYVIRTLTEEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=188884 BBH88_RS11695 WP_006828219.1 2326007..2327260(-) (cinA) [Planococcus antarcticus DSM 14505]
ATGAATGCAGAGGTTATTGCAGTAGGTTCGGAATTGTTATTGGGTCAGATTACCAATACAAATGCTCGTTTTCTGTCTAA
TCATTTAGCAGAACTCGGCATTAATGTTTATTATCACACGGTTGTGGGCGATAACCCCGACCGTTTGGAGGATGCAATAA
AAATTGCGGAAAACCGTGCTGATCTCATTTTATTTACCGGAGGACTGGGTCCGACCAAAGATGATTTGACAAAAGAATCA
ATTGCTGGGCATCTGAACACAACACTTGAGATGAATGAGGAAGCCTTGGATTCCATTGTGGCGTACTTTGAGCGTGCAGG
GCGTCCGATGACTGAAAATAATAAAAAGCAGGCATTGGTGCTGAAAGACAGCGATATTCTCGTTAACTATAACGGCATGG
CACCGGGCATGATGTACAAAAAAGCTGAGTGTGTTTACATACTGTTGCCGGGTCCACCAAAAGAAATGGAGCCGATGTTC
CAATTTGAGGCGAAGCCAAAACTGGCACATTTGTTGAATAAAGAAGATGTCATCTTGTCGCATGTATTGCGCTTTTACGG
AATCGGCGAAGCTGAACTTGAAGATCGCTTGCATCATATTCTTGACAAGCAGTCTAACCCAACTATCGCACCGCTAGCAG
CTGACGGAGAAGTAACTTTACGCATCACTGCAAAAACCAATACTACAGAAGAAGCATGGCAATTAATCAATGGTGCAAAA
GATGAAATTTTAGATTTGGTGGGTCAGTATCTCTATGGCTATGACAACGACTCACTTGCTTCTAAATCGATTGAGCTATT
AAAGAAACAAGACAAAACAATCTCAGCAGCAGAAAGTTTGACTGCTGGCCTTTTTCAATCCGAATTGGCTTCTGTCTCTG
GAGCAAGCGCTGTTCTAGCGGGTGGGGTTATCACGTACAATGAAGAAATGAAGGTACATCAGCTCGGACTATCTGCTGAA
TTGCTGGCTGAATATGGAGTTGTTAGCGAACAAACTGCATTGGCGATGGCTGAAGCTGTACGAGACAAATTCAAGACTGA
TATCAGTGTTTCGCTGACAGGAGCAGCTGGTCCCGATGGTCATGGTGACCAGCCGGCAGGTACTATTTGGATTGGTATCG
CTACCGAGCGGGGAACCCAATCCTATCGTCTTCAACTGTCTGGCATGCGTAATACGAATCGCTTGCGTGCAGTAAAACTG
GCATTGCATTATGTGATTCGAACATTAACTGAAGAAGACGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DG94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.756

98.321

0.489
  cinA Streptococcus mitis SK321

44.391

100

0.446
  cinA Streptococcus pneumoniae Rx1

43.943

100

0.444
  cinA Streptococcus pneumoniae R6

43.943

100

0.444
  cinA Streptococcus mutans UA159

44.471

99.76

0.444
  cinA Streptococcus mitis NCTC 12261

43.914

100

0.441
  cinA Streptococcus pneumoniae TIGR4

43.914

100

0.441
  cinA Streptococcus pneumoniae D39

43.705

100

0.441

Multiple sequence alignment