Detailed information NTG0186769

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: VSVS12_RS13600
• Genome accession: NZ_CP016307
• Coordinates: 3021116..3022156 (-)
• Length: 346 a.a.
• NCBI ID: WP_005593985.1
• Uniprot ID: A0A1B1NRY3
• Organism: Vibrio scophthalmi strain VS-12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3016116..3027156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSVS12_RS13585 (VSVS12_02756)	csrA	3016557..3016754 (-)	198	WP_005593989.1	carbon storage regulator CsrA	-
VSVS12_RS13590 (VSVS12_02757)	-	3016831..3018021 (-)	1191	WP_065430950.1	aspartate kinase	-
VSVS12_RS13595 (VSVS12_02758)	alaS	3018173..3020755 (-)	2583	WP_065430951.1	alanine--tRNA ligase	-
VSVS12_RS13600 (VSVS12_02759)	recA	3021116..3022156 (-)	1041	WP_005593985.1	recombinase RecA	Machinery gene
VSVS12_RS13605 (VSVS12_02760)	pncC	3022371..3022859 (-)	489	WP_005593984.1	nicotinamide-nucleotide amidase	-
VSVS12_RS13610 (VSVS12_02761)	mutS	3022944..3025511 (+)	2568	WP_065430952.1	DNA mismatch repair protein MutS	-
VSVS12_RS13615 (VSVS12_02762)	pilA	3025774..3026232 (+)	459	WP_065430953.1	pilin	Machinery gene

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 37355.80 Da
• Isoelectric Point: 4.9594

>NTDB_id=186769 VSVS12_RS13600 WP_005593985.1 3021116..3022156(-) (recA) [Vibrio scophthalmi strain VS-12]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACKYLKENTEAAQTIDS
KLREMLLTPAQPEEPEVGEMPQEEEF

Nucleotide

• Length: 1041 bp

>NTDB_id=186769 VSVS12_RS13600 WP_005593985.1 3021116..3022156(-) (recA) [Vibrio scophthalmi strain VS-12]
ATGGACGAGAACAAACAGAAGGCGCTCGCCGCTGCGCTAGGTCAGATTGAAAAGCAATTTGGTAAAGGCTCAATCATGCG
CCTTGGTGATAACCGTACAATGGATGTTGAAACCATCTCTACTGGTTCACTTTCTCTAGATATCGCATTGGGTGCTGGTG
GCTTACCAATGGGTCGTATCGTTGAAGTTTACGGTCCAGAATCTTCAGGTAAGACGACGTTAACACTAGAACTGATTGCT
GCTGCGCAACGTGTAGGTAAAACCTGTGCGTTTATTGATGCTGAGCACGCACTTGATCCTATCTATGCGAAGAAGCTAGG
TGTTGATATCGATGCTCTGTTAGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAAATCTGTGATGCACTTGCACGTT
CAGGTGCGATTGATGTGTTGGTTGTCGATTCAGTAGCAGCTCTAACACCAAAAGCAGAAATCGAAGGTGAGATGGGCGAC
AGCCACATGGGTCTGCAAGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACCGGTAACCTTAAGCAGTCAAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACCGGTGGTAACGCGC
TGAAATTCTACGCTTCTGTTCGTCTTGATATCCGTCGTACGGGTTCGATCAAAGATGGTGACGAAGTGGTGGGTAACGAA
ACACGCATTAAAGTGGTTAAGAACAAGATCGCAGCACCATTTAAACAAGCTGAAACACAGATTCTTTACGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGGTTGACCTAGGTGTAAAACACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCTACAATG
GTGACAAAATCGGCCAAGGTAAAGCGAACGCGTGTAAGTACCTAAAAGAGAATACTGAAGCGGCGCAAACCATCGATAGC
AAACTACGTGAAATGCTATTGACCCCAGCTCAACCAGAAGAGCCAGAAGTTGGCGAAATGCCACAAGAAGAAGAGTTCTA
A

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A1B1NRY3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	87.252	100	0.89
recA	Vibrio cholerae O1 biovar El Tor strain E7946	87.252	100	0.89
recA	Pseudomonas stutzeri DSM 10701	72.941	98.266	0.717
recA	Acinetobacter baylyi ADP1	70.809	100	0.708
recA	Acinetobacter baumannii D1279779	74.39	94.798	0.705
recA	Neisseria gonorrhoeae MS11	67.049	100	0.676
recA	Neisseria gonorrhoeae MS11	67.049	100	0.676
recA	Neisseria gonorrhoeae strain FA1090	67.049	100	0.676
recA	Glaesserella parasuis strain SC1401	70.679	93.642	0.662
recA	Ralstonia pseudosolanacearum GMI1000	70.476	91.04	0.642
recA	Helicobacter pylori 26695	59.706	98.266	0.587
recA	Helicobacter pylori strain NCTC11637	59.412	98.266	0.584
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.009	92.197	0.581
recA	Latilactobacillus sakei subsp. sakei 23K	58.309	99.133	0.578
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	92.775	0.578
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.121	95.665	0.575
recA	Streptococcus mutans UA159	60.923	93.931	0.572
recA	Streptococcus pneumoniae D39	61.3	93.353	0.572
recA	Streptococcus pneumoniae Rx1	61.3	93.353	0.572
recA	Streptococcus pneumoniae R6	61.3	93.353	0.572
recA	Streptococcus pneumoniae TIGR4	61.3	93.353	0.572
recA	Streptococcus mitis NCTC 12261	60.991	93.353	0.569
recA	Streptococcus mitis SK321	60.991	93.353	0.569
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	92.775	0.569
recA	Streptococcus pyogenes NZ131	60.615	93.931	0.569
recA	Lactococcus lactis subsp. cremoris KW2	59.443	93.353	0.555