Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VSVS12_RS13615 | Genome accession | NZ_CP016307 |
| Coordinates | 3025774..3026232 (+) | Length | 152 a.a. |
| NCBI ID | WP_065430953.1 | Uniprot ID | A0A1B1NRX3 |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3020774..3031232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS13600 (VSVS12_02759) | recA | 3021116..3022156 (-) | 1041 | WP_005593985.1 | recombinase RecA | Machinery gene |
| VSVS12_RS13605 (VSVS12_02760) | pncC | 3022371..3022859 (-) | 489 | WP_005593984.1 | nicotinamide-nucleotide amidase | - |
| VSVS12_RS13610 (VSVS12_02761) | mutS | 3022944..3025511 (+) | 2568 | WP_065430952.1 | DNA mismatch repair protein MutS | - |
| VSVS12_RS13615 (VSVS12_02762) | pilA | 3025774..3026232 (+) | 459 | WP_065430953.1 | pilin | Machinery gene |
| VSVS12_RS13620 (VSVS12_02763) | pilB | 3026232..3027914 (+) | 1683 | WP_065430954.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VSVS12_RS13625 (VSVS12_02764) | pilC | 3027968..3029191 (+) | 1224 | WP_065430955.1 | type II secretion system F family protein | Machinery gene |
| VSVS12_RS13630 (VSVS12_02765) | - | 3029297..3030165 (+) | 869 | Protein_2609 | prepilin peptidase | - |
| VSVS12_RS13635 (VSVS12_02766) | coaE | 3030170..3030778 (+) | 609 | WP_065430956.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15721.86 Da Isoelectric Point: 4.6853
>NTDB_id=186771 VSVS12_RS13615 WP_065430953.1 3025774..3026232(+) (pilA) [Vibrio scophthalmi strain VS-12]
MNNTLTRSQRGFTLIELMVVMAIVAILAVFAVPAYQDYTKKATMAEFPTIAAPVKLAVEMCALEKASSTSTFATNCSTSA
GHVPSAAINNISVTATNVSGAIQVIAQATSDKGPVKSGEEFILSATYSDQGITWAASCTDAGGNAQSAYCPD
MNNTLTRSQRGFTLIELMVVMAIVAILAVFAVPAYQDYTKKATMAEFPTIAAPVKLAVEMCALEKASSTSTFATNCSTSA
GHVPSAAINNISVTATNVSGAIQVIAQATSDKGPVKSGEEFILSATYSDQGITWAASCTDAGGNAQSAYCPD
Nucleotide
Download Length: 459 bp
>NTDB_id=186771 VSVS12_RS13615 WP_065430953.1 3025774..3026232(+) (pilA) [Vibrio scophthalmi strain VS-12]
ATGAACAATACGTTAACTCGCTCTCAACGCGGTTTCACTCTTATTGAATTAATGGTCGTCATGGCGATTGTCGCTATATT
GGCGGTGTTCGCGGTTCCTGCCTATCAAGACTACACCAAGAAAGCGACCATGGCGGAGTTTCCTACCATCGCCGCCCCAG
TAAAGCTAGCCGTTGAAATGTGCGCACTGGAAAAAGCCTCAAGTACCAGCACGTTTGCCACTAACTGCAGCACTAGTGCA
GGACATGTACCAAGCGCGGCAATCAACAACATCAGTGTTACCGCGACGAATGTCTCTGGCGCAATACAAGTGATCGCTCA
AGCAACAAGCGATAAAGGCCCAGTGAAATCTGGGGAAGAGTTCATTCTCAGCGCGACGTACAGCGATCAGGGCATTACTT
GGGCGGCCAGTTGTACAGACGCCGGTGGCAATGCACAAAGCGCCTACTGTCCAGATTAA
ATGAACAATACGTTAACTCGCTCTCAACGCGGTTTCACTCTTATTGAATTAATGGTCGTCATGGCGATTGTCGCTATATT
GGCGGTGTTCGCGGTTCCTGCCTATCAAGACTACACCAAGAAAGCGACCATGGCGGAGTTTCCTACCATCGCCGCCCCAG
TAAAGCTAGCCGTTGAAATGTGCGCACTGGAAAAAGCCTCAAGTACCAGCACGTTTGCCACTAACTGCAGCACTAGTGCA
GGACATGTACCAAGCGCGGCAATCAACAACATCAGTGTTACCGCGACGAATGTCTCTGGCGCAATACAAGTGATCGCTCA
AGCAACAAGCGATAAAGGCCCAGTGAAATCTGGGGAAGAGTTCATTCTCAGCGCGACGTACAGCGATCAGGGCATTACTT
GGGCGGCCAGTTGTACAGACGCCGGTGGCAATGCACAAAGCGCCTACTGTCCAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
52.597 |
100 |
0.533 |
| pilA | Haemophilus influenzae Rd KW20 |
38.095 |
96.711 |
0.368 |
| pilA | Haemophilus influenzae 86-028NP |
38.732 |
93.421 |
0.362 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.194 |
94.737 |
0.362 |