Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   A6J87_RS06690 Genome accession   NZ_CP020451
Coordinates   1289374..1291392 (+) Length   672 a.a.
NCBI ID   WP_064523151.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284374..1296392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS06670 (A6J87_06645) - 1285608..1286639 (+) 1032 WP_002891816.1 3-deoxy-7-phosphoheptulonate synthase -
  A6J87_RS06675 (A6J87_06650) - 1286724..1287755 (+) 1032 WP_064523065.1 3-deoxy-7-phosphoheptulonate synthase -
  A6J87_RS06680 (A6J87_06655) acpS 1287758..1288117 (+) 360 WP_080611775.1 holo-ACP synthase -
  A6J87_RS06685 (A6J87_06660) alr 1288138..1289241 (+) 1104 WP_064523063.1 alanine racemase -
  A6J87_RS06690 (A6J87_06665) recG/mmsA 1289374..1291392 (+) 2019 WP_064523151.1 ATP-dependent DNA helicase RecG Machinery gene
  A6J87_RS06695 (A6J87_06670) - 1291385..1291888 (+) 504 WP_225791422.1 hypothetical protein -
  A6J87_RS06700 (A6J87_06675) - 1292508..1292945 (+) 438 WP_064523061.1 hypothetical protein -
  A6J87_RS06705 (A6J87_06680) - 1293137..1293745 (+) 609 WP_064523057.1 DUF2975 domain-containing protein -
  A6J87_RS06710 (A6J87_06685) - 1293755..1293967 (+) 213 WP_002884695.1 helix-turn-helix transcriptional regulator -
  A6J87_RS10900 - 1294019..1294162 (-) 144 WP_171963614.1 hypothetical protein -
  A6J87_RS06715 (A6J87_06690) - 1294166..1295134 (-) 969 WP_037599095.1 asparaginase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75099.40 Da        Isoelectric Point: 6.0968

>NTDB_id=186772 A6J87_RS06690 WP_064523151.1 1289374..1291392(+) (recG/mmsA) [Streptococcus salivarius strain FDAARGOS_259]
MIQLDSPIADLKGFGPKSAEKFIKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIKAAF
DSGALNLLEENLPQVLLDKYRLMGRQEAVRALHFPKGLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAIAYDK
AKIKAKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=186772 A6J87_RS06690 WP_064523151.1 1289374..1291392(+) (recG/mmsA) [Streptococcus salivarius strain FDAARGOS_259]
ATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGGCCTAAGTCCGCTGAAAAATTTATCAAATTAGATTT
ACACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAGGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCTGTTATTACGGGAACAGTGGTGACGCCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAGGCTGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTGGACAAGATTGAGAT
GGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCTGTGACTGGTATGAAAGTTCTGGCTCAAGTTG
AGGACGATATGCAACCAGTCTACCATGTGGCCCAGGGTGTTAGTCAGGCCCAACTGATAAAGGCCATAAAGGCAGCTTTT
GATAGTGGGGCCCTTAATTTGTTGGAGGAAAATCTCCCTCAGGTGCTGCTGGACAAGTACCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGCCTTGCATTTTCCGAAAGGTTTGGCTGAATATAAGCAGGCTCTACGTAGGACCAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTGAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGCAATTGCTTACGATAAA
GCCAAAATCAAAGCCAAAATTGCAGCATTACCATTCCCCTTAACAGAGGCCCAACAGCGTAGTTTATCGGAAATCCTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTCTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTATCGCTAGCTTGG
CTATGTATGGGGCTTATACGGCAGGATTTCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTACAGGGCCTTTTTCCTGAGTTAGAGGTAGTGCTCCTAACTTCTGGAATGAAGGCCGCGGATAAGAAAGTAGCCCT
TTCCAAAATCGAGTCTGGGGAGGCTCAGATGATTGTGGGAACCCACTCGTTGATTCAAGATGCAGTGACTTATCATAGTC
TTGGGCTAGTCATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGTGAGAAGGGTGACAATCCT
GATGTCCTCATGATGACGGCAACACCTATTCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTATCTATCAT
TGACCAGATGCCGGCTGGGCGTAAGCCCATTATTACCCGTTGGGTCAAACATGAGCAGTTAGATACCGTACTGACTTGGA
TTAAGGGTGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTCTGATTGAAGAGTCTGAGGCTCTTGATTTGAAA
AATGCGGTGGCTCTTCATCAGGAACTCACAGAGTTCTTTGGGGATTCAGCTACAGTAGCTCTGATGCACGGTCGTATGAA
AAATGATGAAAAAGACCAAATTATGCAAGATTTCAAGGACAGAAAATCTCAGATTTTAGTATCAACCACAGTTATCGAAG
TAGGTGTTAACGTGCCAAATGCTACAGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGGCGTGTAGGTCGTGGCGATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAGAATGATACCGGGAAAAAACG
CATGCAGGCCATGTGTGAGACTACAGATGGTTTTGTTCTAGCCGAAGAGGACCTTAAAATGCGTGGTTCAGGAGAAATCT
TTGGAACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTACAATATCTTAGAGGAAGCCAGA
CGGGTGGCTAGCCAAATTGTATCTGACCCTAACTGGCGTGAGAATCCTGATTGGCAGGTGCTAGGAGCTCATTTGAGAAG
CCAAGGCGAGTTTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-412)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

RecG wedge domain (RecG_wedge)

(11-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.684

99.851

0.716
  recG/mmsA Streptococcus pneumoniae R36A

71.684

99.851

0.716
  recG Bacillus subtilis subsp. subtilis str. 168

49.034

100

0.491
  recG Neisseria meningitidis strain C311

39.701

99.702

0.396

Multiple sequence alignment