Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | VSVS12_RS13625 | Genome accession | NZ_CP016307 |
| Coordinates | 3027968..3029191 (+) | Length | 407 a.a. |
| NCBI ID | WP_065430955.1 | Uniprot ID | - |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3022968..3034191
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS13615 (VSVS12_02762) | pilA | 3025774..3026232 (+) | 459 | WP_065430953.1 | pilin | Machinery gene |
| VSVS12_RS13620 (VSVS12_02763) | pilB | 3026232..3027914 (+) | 1683 | WP_065430954.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VSVS12_RS13625 (VSVS12_02764) | pilC | 3027968..3029191 (+) | 1224 | WP_065430955.1 | type II secretion system F family protein | Machinery gene |
| VSVS12_RS13630 (VSVS12_02765) | - | 3029297..3030165 (+) | 869 | Protein_2609 | prepilin peptidase | - |
| VSVS12_RS13635 (VSVS12_02766) | coaE | 3030170..3030778 (+) | 609 | WP_065430956.1 | dephospho-CoA kinase | - |
| VSVS12_RS13640 (VSVS12_02767) | zapD | 3030813..3031553 (+) | 741 | WP_005593976.1 | cell division protein ZapD | - |
| VSVS12_RS13645 (VSVS12_02768) | yacG | 3031629..3031823 (+) | 195 | WP_005593974.1 | DNA gyrase inhibitor YacG | - |
| VSVS12_RS13650 (VSVS12_02769) | rplS | 3032182..3032535 (-) | 354 | WP_005593972.1 | 50S ribosomal protein L19 | - |
| VSVS12_RS13655 (VSVS12_02770) | trmD | 3032585..3033334 (-) | 750 | WP_065430957.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| VSVS12_RS13660 (VSVS12_02771) | rimM | 3033362..3033916 (-) | 555 | WP_005593970.1 | ribosome maturation factor RimM | - |
| VSVS12_RS13665 (VSVS12_02772) | rpsP | 3033941..3034189 (-) | 249 | WP_005593968.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 45526.73 Da Isoelectric Point: 10.2692
>NTDB_id=186773 VSVS12_RS13625 WP_065430955.1 3027968..3029191(+) (pilC) [Vibrio scophthalmi strain VS-12]
MNKKSQHRLKIYRWKGTNSVGRRVTGKYLAFRESDVRQRLKQQKIRINQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHREK
SEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLLC
KWAQARSSRCRIYLSRTSLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQAALERVLKDTAAG
MPFYLAMRDSDTFPEMPLQMLMIGEEAGKLDEMLIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPIF
NLMNVIG
MNKKSQHRLKIYRWKGTNSVGRRVTGKYLAFRESDVRQRLKQQKIRINQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHREK
SEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLLC
KWAQARSSRCRIYLSRTSLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQAALERVLKDTAAG
MPFYLAMRDSDTFPEMPLQMLMIGEEAGKLDEMLIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPIF
NLMNVIG
Nucleotide
Download Length: 1224 bp
>NTDB_id=186773 VSVS12_RS13625 WP_065430955.1 3027968..3029191(+) (pilC) [Vibrio scophthalmi strain VS-12]
ATGAATAAAAAATCACAGCACCGGTTGAAAATCTATCGCTGGAAGGGAACCAACTCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCAATCAGTTAACCTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCCAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGAATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAAGCCTTAAAAGCAACGCATCAGTTTGATTCTCTTT
ATATCGATCTTGTCGCGACGGGGGAAGCGACAGGACAGCTCAACCAAGTGTTTTCCCGTATCGCTGAACACCGTGAAAAA
TCTGAGCACCTCAAAGCCAAAGTAATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAGTTG
GGTGATGTTAACCATCGTCATTCCTGAATTTGATAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTCAAC
AAGTATTATCGCTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTCTGC
AAATGGGCTCAAGCACGTTCGTCTCGCTGCCGGATCTACTTGAGCCGAACCAGTTTGCGCCTCCCTCTCATCGGCCCAAT
CATCAGTAAGGCGGCAATCGCTAAGTTCAGTCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTGTCTTGTT
TGAAATCAGCCGCGAAAACCACCAATCAGCTCTATTACCAAGCGGCTCTTGAACGAGTGCTAAAAGATACCGCAGCAGGC
ATGCCGTTTTATCTCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGAGGC
AGGTAAGCTTGATGAGATGCTGATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTTGGCA
AAATCATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTCGGTAGCCTCGTTATCGCTATCTACTTACCAATATTT
AATTTAATGAACGTTATAGGCTAA
ATGAATAAAAAATCACAGCACCGGTTGAAAATCTATCGCTGGAAGGGAACCAACTCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCAATCAGTTAACCTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCCAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGAATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAAGCCTTAAAAGCAACGCATCAGTTTGATTCTCTTT
ATATCGATCTTGTCGCGACGGGGGAAGCGACAGGACAGCTCAACCAAGTGTTTTCCCGTATCGCTGAACACCGTGAAAAA
TCTGAGCACCTCAAAGCCAAAGTAATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAGTTG
GGTGATGTTAACCATCGTCATTCCTGAATTTGATAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTCAAC
AAGTATTATCGCTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTCTGC
AAATGGGCTCAAGCACGTTCGTCTCGCTGCCGGATCTACTTGAGCCGAACCAGTTTGCGCCTCCCTCTCATCGGCCCAAT
CATCAGTAAGGCGGCAATCGCTAAGTTCAGTCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTGTCTTGTT
TGAAATCAGCCGCGAAAACCACCAATCAGCTCTATTACCAAGCGGCTCTTGAACGAGTGCTAAAAGATACCGCAGCAGGC
ATGCCGTTTTATCTCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGAGGC
AGGTAAGCTTGATGAGATGCTGATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTTGGCA
AAATCATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTCGGTAGCCTCGTTATCGCTATCTACTTACCAATATTT
AATTTAATGAACGTTATAGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
57.75 |
98.28 |
0.568 |
| pilC | Vibrio campbellii strain DS40M4 |
57.357 |
98.526 |
0.565 |
| pilC | Acinetobacter baylyi ADP1 |
37.99 |
100 |
0.381 |
| pilC | Acinetobacter baumannii D1279779 |
37.255 |
100 |
0.373 |