Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   dqs_RS02555 Genome accession   NZ_CP016210
Coordinates   551821..552855 (-) Length   344 a.a.
NCBI ID   WP_011764242.1    Uniprot ID   A1K2R9
Organism   Azoarcus olearius strain DQS-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546821..557855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  dqs_RS02525 (dqs_0511) hprK 547303..548244 (-) 942 WP_011764236.1 HPr(Ser) kinase/phosphatase -
  dqs_RS02530 (dqs_0512) ptsN 548213..548698 (-) 486 WP_011764237.1 PTS IIA-like nitrogen regulatory protein PtsN -
  dqs_RS02535 (dqs_0513) hpf 548832..549155 (-) 324 WP_011764238.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  dqs_RS02540 (dqs_0514) rpoN/rpoN1 549170..550630 (-) 1461 WP_011764239.1 RNA polymerase factor sigma-54 Machinery gene
  dqs_RS02545 (dqs_0515) lptB 550640..551362 (-) 723 WP_011764240.1 LPS export ABC transporter ATP-binding protein -
  dqs_RS02550 (dqs_0516) recX 551349..551798 (-) 450 WP_065339573.1 recombination regulator RecX -
  dqs_RS02555 (dqs_0517) recA 551821..552855 (-) 1035 WP_011764242.1 recombinase RecA Machinery gene
  dqs_RS02560 (dqs_0518) - 552980..553465 (-) 486 WP_179948008.1 CinA family protein -
  dqs_RS02565 (dqs_0519) - 553468..553950 (-) 483 WP_065339574.1 phosphatidylglycerophosphatase A -
  dqs_RS02570 (dqs_0520) thiL 553955..554965 (-) 1011 WP_236778724.1 thiamine-phosphate kinase -
  dqs_RS02575 (dqs_0521) - 555100..555381 (-) 282 WP_011764246.1 RnfH family protein -
  dqs_RS02580 (dqs_0522) - 555402..556136 (-) 735 WP_084018171.1 electron transport complex subunit E -
  dqs_RS02585 (dqs_0523) rsxG 556147..556773 (-) 627 WP_065339575.1 electron transport complex subunit RsxG -
  dqs_RS02590 (dqs_0524) - 556790..557845 (-) 1056 WP_011764249.1 RnfABCDGE type electron transport complex subunit D -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36757.15 Da        Isoelectric Point: 5.5503

>NTDB_id=186184 dqs_RS02555 WP_011764242.1 551821..552855(-) (recA) [Azoarcus olearius strain DQS-4]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVV
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGTIKRGDEVVGS
ETKVKVVKNKVSPPFKEAHFDILYGEGVSREGEIIDLGVDHKIVDKSGAWYAYNGDKIGQGKDNAREFLRANPALAREIE
NKVRVVLGLKELPVDGAQPAAAEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=186184 dqs_RS02555 WP_011764242.1 551821..552855(-) (recA) [Azoarcus olearius strain DQS-4]
ATGGACGACAACAAGGCCAAGGCCCTTGCCGCCGCGCTATCCCAGATCGAAAAGCAGTTCGGCAAGGGATCCATCATGCG
CATGGGCGACGGCAATGTCGAAAAGGACATCCAGACCGTTTCCACCGGCTCGCTCGGCCTCGACATCGCGCTCGGCCTGG
GCGGCCTGCCGCGCGGCCGCGTCGTCGAAATCTACGGGCCGGAGTCGTCCGGCAAGACCACGCTGACGCTGCAGGTCGTC
GCCGAAATGCAGAAGCTCGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTACGCCGAAAAGCT
CGGCGTGAACATCACCGACCTGCTGATCTCGCAGCCGGATACTGGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGC
GGTCCGGCGGCGTGGACGTGGTCGTCATCGACTCGGTCGCGGCGCTCACCCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGTCTCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGCAACCCGGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACCATCAAGCGCGGCGACGAGGTGGTCGGCTCC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCAAGGAGGCGCACTTCGACATCCTGTACGGCGAAGG
CGTGTCGCGCGAGGGCGAGATCATCGACCTCGGCGTGGACCACAAGATCGTCGACAAGTCCGGCGCCTGGTACGCCTACA
ACGGCGACAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATTCCTGCGCGCCAACCCGGCGCTGGCACGCGAGATCGAG
AACAAGGTCCGCGTCGTGCTCGGCCTCAAGGAACTGCCGGTCGACGGCGCGCAGCCGGCCGCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1K2R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.395

91.279

0.77
  recA Pseudomonas stutzeri DSM 10701

74.006

95.058

0.703
  recA Vibrio cholerae strain A1552

73.089

95.058

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

95.058

0.695
  recA Neisseria gonorrhoeae MS11

69.527

98.256

0.683
  recA Neisseria gonorrhoeae MS11

69.527

98.256

0.683
  recA Neisseria gonorrhoeae strain FA1090

69.527

98.256

0.683
  recA Acinetobacter baylyi ADP1

72.531

94.186

0.683
  recA Acinetobacter baumannii D1279779

71.914

94.186

0.677
  recA Glaesserella parasuis strain SC1401

70.462

94.477

0.666
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

95.349

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

96.221

0.622
  recA Helicobacter pylori 26695

63.855

96.512

0.616
  recA Helicobacter pylori strain NCTC11637

63.855

96.512

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.134

95.64

0.613
  recA Streptococcus mitis NCTC 12261

60.35

99.709

0.602
  recA Streptococcus mitis SK321

60.882

98.837

0.602
  recA Streptococcus mutans UA159

61.862

96.802

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

96.221

0.596
  recA Streptococcus pneumoniae Rx1

61.702

95.64

0.59
  recA Streptococcus pneumoniae D39

61.702

95.64

0.59
  recA Streptococcus pneumoniae R6

61.702

95.64

0.59
  recA Streptococcus pneumoniae TIGR4

61.702

95.64

0.59
  recA Streptococcus pyogenes NZ131

61.515

95.93

0.59
  recA Lactococcus lactis subsp. cremoris KW2

60.856

95.058

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

93.023

0.564

Multiple sequence alignment